PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g04650.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 423aa    MW: 45661.9 Da    PI: 6.4542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g04650.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05274296123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp Cgk Fs+   L  H  +H
  Zjn_sc00001.1.g04650.1.sm.mk 274 FECPGCGKAFSSYQALGGHRASH 296
                                   89***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-4830IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.27830IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93835IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-8830No hitNo description
PfamPF139123.7E-7831IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-8269296No hitNo description
Gene3DG3DSA:3.30.160.602.3E-4273297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.2E-11273298IPR007087Zinc finger, C2H2
SMARTSM003550.12274296IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637274296IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
SMARTSM003550.75362384IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307362389IPR007087Zinc finger, C2H2
PfamPF139123.7E-7362384IPR007087Zinc finger, C2H2
PROSITE patternPS000280364384IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MELAAVRHGC KVCGKRFPCG RSLGGHMRSH LSLSEATAEA DANDELKHES LDFDRSSNGV  60
VGYGLRKNPR KTRRLSDFGD EEEENNCGDG HRDGEHKACQ HMQSHASAGR DRDEEDAEEL  120
VREEANAEEV ENMEMVEAPV LASAPVALLA VEPRRRRRTM RVAAPVPAPP PVRSGFEKEQ  180
EDVALCLLML SRDTGLWSSP VKEEPFEKEN DHSNATRKQP RLPRNGNAYS FDEASALLQH  240
DDAKIKSGGI VKCRKRSSPK QQCQAVLTPK RTRFECPGCG KAFSSYQALG GHRASHKRIN  300
ISCTAPKAPD VPAAEPSTAT YTSFSTQSPS VSPDSAAISI GGDGVSGKAK ASASPDAVLE  360
KFECPICFKV FASGQALAGH KPTHLLSNDD DLYDASGDQE VQHTSATAGL LVLDLNFPPA  420
PAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RRRRRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126153e-31CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361333e-31CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308538.11e-124zinc finger protein 865
TrEMBLA0A3L6TCN71e-123A0A3L6TCN7_PANMI; Uncharacterized protein
STRINGPavir.J10663.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-16C2H2-like zinc finger protein