PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g04140.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 539aa    MW: 58370 Da    PI: 10.029
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g04140.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.95.4e-57291386297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy+ep
  Zjn_sc00001.1.g04140.1.am.mk 291 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEP 371
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk+yl+k+relegek
  Zjn_sc00001.1.g04140.1.am.mk 372 LKLYLHKFRELEGEK 386
                                   ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-53288397IPR009072Histone-fold
SuperFamilySSF471131.47E-39293390IPR009072Histone-fold
PfamPF008083.1E-27296360IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-19324342No hitNo description
PROSITE patternPS006850327343IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-19343361No hitNo description
PRINTSPR006151.2E-19362380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDFTVWSPER RRCLAGRLGH WLDRSGVNVT TVTTGRQEAP KVMCSSVLNY KEPGAVQVTA  60
AKKWSKNHGH GRAAPRRDNH LSESYVVVSH PRPRSVALIR RRRPPERGLT PGAKPPGPAV  120
GCALDPARQR SPLRSRRPEY WLSRSVTASL IDARYLLLPE RRLSPHLQEQ VVSNIDEAKP  180
RKFAEEGGAL IWLAIGYGKV RLTLPHVSFL RGSLPGPPPR IARPLAHSNG RDASSVAETD  240
GISERRLAPD LSARKERGEQ GEPALFLGPA AMPDSDNESG GPSNAEFSSP REQDRFLPIA  300
NVSRIMKKAL PANAKISKDA KETVQECVSE FISFITGEAS DKCQREKRKT INGDDLLWAM  360
TTLGFEDYIE PLKLYLHKFR ELEGEKVATG ASGSGQQQKD APSSAHNNAA GYGVYGGAGA  420
GGSGSGMVMM MGQPMYGSPP AGYPQPPHHQ MVMGGAKGAY GHGGASPSGL GRQDRPLRGN  480
ESEPAGFRWP GKDLHGQVTG HCSVRDACFC LDWPHRSEAV SISPVKERGH GMHCAARGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-45291381797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563831e-170EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-66nuclear factor Y, subunit B3