PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g02990.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 786aa MW: 84843.5 Da PI: 10.1804

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g02990.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	218	265	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv + +++G+g+W++++++ g+ R+ k+c++rw +yl Zjn_sc00001.1.g02990.1.am.mk 218 KGPWTPEEDLVLVSYLQEHGPGNWRAVPAKTGLMRCSKSCRLRWTNYL 265 79********************************************97 PP
2	Myb_DNA-binding	48.5	2.1e-15	271	316	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Zjn_sc00001.1.g02990.1.am.mk 271 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNFWNTHL 316 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-23	209	268	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.522	213	269	IPR017930	Myb domain
SuperFamily	SSF46689	2.1E-28	215	312	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-13	217	267	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	218	265	IPR001005	SANT/Myb domain
CDD	cd00167	1.31E-10	220	265	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-23	269	320	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.067	270	320	IPR017930	Myb domain
SMART	SM00717	6.8E-16	270	318	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-14	271	316	IPR001005	SANT/Myb domain
CDD	cd00167	5.29E-11	273	316	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MALGPGNLSV DYPAPLLWPL PPRHGLNLIA SGQGEWKPGA FATRHMRPGH ASAAIECQGR 60 GVVPRHGIAP PHSTMDESAS VGVFFASNDR EGRKLLQRPQ LLDADGNRRA FVRLTSVRRS 120 RSSSKVSAVV WPRPETGVSV YKHANNSRVA TLNRGHHDSH SRERKILFSQ LWLITHQFHA 180 HFQSRACRAK TQQKGSLLDR PPSTMGRPPC CDKEGVKKGP WTPEEDLVLV SYLQEHGPGN 240 WRAVPAKTGL MRCSKSCRLR WTNYLRPGIK RGNFTDQEEK LIVHLQALLG NRWAAIASYL 300 PERTDNDIKN FWNTHLKRKL QSTGGDAAAK PTAHRPLASS KGHWERRLQT DINMARRALR 360 EALTPLDDVV KTPQPDAAGA ETGGDVDNPA PCSSGASQWF PSTASAPGKG RRGGSGKGTP 420 GGEESASGSS DASEVSYGGA VALDTGHLFE YETKPAVPAQ QTQLSAIDNF HHVQSASLLD 480 AAMDYPHRIP TSRHSPRSPK QSRNRSDRRS YFILPSKDAQ ASPSLIPDLL LTKTESPAAM 540 DMSVIAARLG LCDVTFESSV LGIVSACLPP PPQAPPVHFR SFAHIRVDAS LISALCRARC 600 ARPSSASRSR RPSGYLSCRR DWRSTGPDGW SEASAPTPGA GDIDGCEVHI PSSLETFQFT 660 LGLSNEISIG FAGLQARNRG SRGFECSKFG RVGAGRGTGV CHSEEGGGAS ARECGAPGEV 720 DAAAAARVES GRVSTSMSDL CFDVFGIAKE KKDTNSIKGN RDPAKPRRQA QLNFKKPGIE 780 VPSAAN

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MALGPGNLSV DYPAPLLWPL PPRHGLNLIA SGQGEWKPGA FATRHMRPGH ASAAIECQGR  60
GVVPRHGIAP PHSTMDESAS VGVFFASNDR EGRKLLQRPQ LLDADGNRRA FVRLTSVRRS  120
RSSSKVSAVV WPRPETGVSV YKHANNSRVA TLNRGHHDSH SRERKILFSQ LWLITHQFHA  180
HFQSRACRAK TQQKGSLLDR PPSTMGRPPC CDKEGVKKGP WTPEEDLVLV SYLQEHGPGN  240
WRAVPAKTGL MRCSKSCRLR WTNYLRPGIK RGNFTDQEEK LIVHLQALLG NRWAAIASYL  300
PERTDNDIKN FWNTHLKRKL QSTGGDAAAK PTAHRPLASS KGHWERRLQT DINMARRALR  360
EALTPLDDVV KTPQPDAAGA ETGGDVDNPA PCSSGASQWF PSTASAPGKG RRGGSGKGTP  420
GGEESASGSS DASEVSYGGA VALDTGHLFE YETKPAVPAQ QTQLSAIDNF HHVQSASLLD  480
AAMDYPHRIP TSRHSPRSPK QSRNRSDRRS YFILPSKDAQ ASPSLIPDLL LTKTESPAAM  540
DMSVIAARLG LCDVTFESSV LGIVSACLPP PPQAPPVHFR SFAHIRVDAS LISALCRARC  600
ARPSSASRSR RPSGYLSCRR DWRSTGPDGW SEASAPTPGA GDIDGCEVHI PSSLETFQFT  660
LGLSNEISIG FAGLQARNRG SRGFECSKFG RVGAGRGTGV CHSEEGGGAS ARECGAPGEV  720
DAAAAARVES GRVSTSMSDL CFDVFGIAKE KKDTNSIKGN RDPAKPRRQA QLNFKKPGIE  780
VPSAAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	9e-26	218	320	4	105	C-Myb DNA-Binding Domain
1msf_C	9e-26	218	320	4	105	C-Myb DNA-Binding Domain

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042611	0.0	BT042611.1 Zea mays full-length cDNA clone ZM_BFb0368F24 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-84	myb domain protein 94