PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g02400.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 324aa MW: 36332.4 Da PI: 6.798

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g02400.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.6	2.7e-35	32	124	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d+ +++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+ Zjn_sc00001.1.g02400.1.sm.mk 32 FLTKTYQLVDDPCTDHIVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFA 103 9**************************************************************999......... PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 ++ F+kg k+ll +i+r+ks+ Zjn_sc00001.1.g02400.1.sm.mk 104 NEFFRKGAKHLLAEIHRRKSS 124 ****************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.1E-37	23	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.0E-58	28	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.01E-33	29	121	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.8E-19	32	55	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.4E-31	32	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-19	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	71	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-19	83	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAFQLVERCG EMVVSTMESS AHAKPEPVPA PFLTKTYQLV DDPCTDHIVS WGDDDTTFVV 60 WRPPEFARDL LPNYFKHNNF SSFVRQLNTY GFRKIVADRW EFANEFFRKG AKHLLAEIHR 120 RKSSQQPPTP LPPHQPFRHH HHLHHHHLNP FSPPPPPPTH PAVYRFQEEP TGAAHGGVVN 180 VNGGGSNNGN RSGGDFLAVL SEDNRQLRRR NSLLLSELAH MKKLYNDIIY FLQNHVAPVT 240 SPSSTAAAHS PQLPTSAGCV ASSCRLMELD PDSSSPPPRP EDTDGTVKLF GVALQGTKKR 300 QHREDEGEDD DDHDQGFREG TSEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-22	23	124	12	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054148	1e-156	BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463264.1	1e-143	heat stress transcription factor B-4b
Swissprot	Q7XHZ0	1e-122	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A1E5VCU8	1e-144	A0A1E5VCU8_9POAL; Heat stress transcription factor B-4b
STRING	Sb02g040790.1	1e-142	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	9e-64	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]