PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g00880.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 919aa    MW: 101794 Da    PI: 6.5659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g00880.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.9e-19318417198
                                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 
                                     f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L+
  Zjn_sc00001.1.g00880.1.sm.mkhc 318 FEKVLSASDAGRIGRLVLPKACAEAYlpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQ 395
                                     99**************************555567778***************9989999999***9.************ PP

                                     TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  76 egDfvvFkldgrsefelvvkvfr 98 
                                     +gD+v+F++++  +++lv+++++
  Zjn_sc00001.1.g00880.1.sm.mkhc 396 AGDTVTFSRIE-PGGKLVMGFRK 417
                                     ********887.77777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-31310427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-21315418IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-24316417No hitNo description
SMARTSM010193.5E-22318418IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589318419IPR003340B3 DNA binding domain
PfamPF023625.0E-16318417IPR003340B3 DNA binding domain
PROSITE profilePS5105014.685579629IPR011124Zinc finger, CW-type
PfamPF074962.7E-11584626IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MNVTYCFVSE SNRSWHTSSL SFVTSFIKRN QAGETARFVG SVSIVDVSHR RTLTIYLMAE  60
EFNGSGQVVP KLFPSQRNLQ IFGKSEELLP GRKFVQSPPI TVDSINDDIT IISKNNRPFI  120
VRNIEVGQSS SILRQKEIEN GSRQIKWEPA TLNIGDMGRM PFLTRTQSAL ESPHGVQRDD  180
SKDPITESTT NRSLSEARLS MTLGIANNGS KMEATSPVDR HMLSPTTVIA EGRELTTSLL  240
SPFQNAQRAR HFLTRPPRVS EDAAFDPTKD VFSHLRVARP PTEGRGRNQL LPRYWPRITD  300
QELQQISGDS NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYLPPISQP EGRPLTIQDA  360
RGKEWHFQFR FWPNNNSRMY VLEGVTPCIQ SLQLQAGDTV TFSRIEPGGK LVMGFRKATN  420
TVSLPDSQIS AIANGSLLSE TLFSSANENL PVVSGYPGFL QSIKGAADLH PSSLYDHHVH  480
SADGDVSWPK TDKLGSRLDE GSLPFLQKKS RNIGSKSRRF LMDAEDALEL KLTWEEAQEL  540
LRPAPTSKPT FVTIEDYEFE EYDEPPVFAK RSIFTIRATG EQDQWIQCDD CSKWRRLPLN  600
VIVVSKWTCT DNSWDTKSCS CSAPEELTTK ELQSVLQQYE EMRRRKGISY GMKLNVAEMD  660
GTSLDALATA TVYGEIGNQG STSVATTTKH PRHRPGCTCI VCIQPPSGKG PKHSPSCTCN  720
VCMTVKRRFK TLMMRKKQRQ SERDEAEASK KIQWASRDET EGSSLTRSPQ TLDTTRDSDV  780
TMSDKQAADM SKGHIDLNFH PAVREDQEQH GSQPRPASMM GLLEVATRPL DNYMKQNGLT  840
CLGGGEQGGS PSTATVPPAP VESEERASNE NLEREREREP DAMTVDEASE DQQDKAAADD  900
SAPPPPPPPP PPAAAAAAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C8e-672964201125B3 domain-containing transcription repressor VAL1
5yzz_C8e-672964201125B3 domain-containing transcription repressor VAL1
5z00_C8e-672964201125B3 domain-containing transcription repressor VAL1
5z00_G8e-672964201125B3 domain-containing transcription repressor VAL1
5z00_K8e-672964201125B3 domain-containing transcription repressor VAL1
5z00_M8e-672964201125B3 domain-containing transcription repressor VAL1
6j9a_A9e-672964202126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1725736KRRFKTLMMRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958699.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK3ZQF40.0K3ZQF4_SETIT; Uncharacterized protein
STRINGPavir.Ba00225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-170HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]