PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00001.1.g00630.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 73aa MW: 8371.48 Da PI: 5.654 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.5 | 9.4e-18 | 18 | 66 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 lppGfrFhPtdeelv +yL++k+ +++ + vi++vd++k+ePw+Lp k Zjn_sc00001.1.g00630.1.sm.mk 18 LPPGFRFHPTDEELVIQYLARKALNSRYTS-PVIADVDLLKWEPWHLPGK 66 79*************************888.89**************943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-19 | 14 | 67 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.389 | 18 | 73 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-8 | 19 | 63 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MSEVPANNSQ GEEQLLELPP GFRFHPTDEE LVIQYLARKA LNSRYTSPVI ADVDLLKWEP 60 WHLPGKQSAR RLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-16 | 13 | 64 | 10 | 61 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461233.1 | 2e-19 | NAC domain-containing protein 79 | ||||
Swissprot | Q39013 | 7e-18 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1E5VF37 | 1e-19 | A0A1E5VF37_9POAL; NAC domain-containing protein 100 | ||||
STRING | Pavir.J13094.1.p | 2e-19 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14845 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-20 | NAC family protein |