PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g00460.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 311aa MW: 34679.4 Da PI: 9.3609

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g00460.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.1	1e-09	24	61	7	44
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 rr+++NReAAr+sR+RKka++++Le +L + ++ Zjn_sc00001.1.g00460.1.am.mkhc 24 LRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 61 69************************855444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.5E-8	16	65	No hit	No description
SMART	SM00338	1.2E-4	18	81	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.818	20	64	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.88E-7	23	65	No hit	No description
Pfam	PF00170	9.3E-7	24	63	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	25	40	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-33	104	179	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MADASSRTDT SIVLDDNDKN QTMLRRLAQN REAARKSRLR KKAYVQQLES SKLKLAQLEQ 60 ELQKARQQGI FISSSGDQTH AMSGNGALTF DIEYARWLEE QNKQINELRS AVNAHASDSD 120 LRLIVDGILA HYDEIFKVKG VAAKADVFHI LSGMWKTPAE RCFLWLGGFR PSELLKLLAT 180 HLEPLTEQQT LGLNNLQQSS QQAEDALSQG MEALQQSLAE TLAGSLGPSG SSGNVANYMG 240 QMAMAMGKLG TLENFLRQAS ITVADNLRQQ TLHQMQRILT IRQASRALLA IHDYFSRLRA 300 LSSLWLARPR E

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001333859.1	0.0	uncharacterized protein LOC100279481
Refseq	XP_008651318.1	0.0	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_008651320.1	0.0	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396043.1	0.0	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396044.1	0.0	uncharacterized protein LOC100279481 isoform X2
Swissprot	Q7X993	0.0	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A3L6E4R9	0.0	A0A3L6E4R9_MAIZE; Transcription factor TGA2.1
TrEMBL	C0HGY0	0.0	C0HGY0_MAIZE; Transcription factor TGA6
TrEMBL	K4JBS2	0.0	K4JBS2_MAIZE; BZIP-type transcription factor (Fragment)
STRING	GRMZM2G361847_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-125	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]