PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01038629001
Common NameLOC100250422, VIT_16s0098g01080
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRF
Protein Properties Length: 604aa    MW: 63695.3 Da    PI: 8.216
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01038629001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.17.3e-24191234144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRCsr+v  ++k+CErH+hrgr rsrk++e
  GSVIVT01038629001 191 DPEPGRCRRTDGKKWRCSRDVALNQKYCERHMHRGRPRSRKPVE 234
                        79***************************************997 PP
2QLQ58.12.6e-20128163237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        +FT aQ+ +L++Q+++yKy++a++PvPpeLl++i++
  GSVIVT01038629001 128 PFTSAQWKELERQAMIYKYIMASVPVPPELLMPITR 163
                        8*********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-13127163IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-15128161IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.905128163IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.635191235IPR014977WRC domain
PfamPF088795.9E-20192234IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MSGSGGGGLG LTLQQRGTES FLFPCSRMMM MVRHNHDRAF EGGGGGGGGG GDGHGPTGSG  60
GAEEVVRCMS DIYDVAGGSG SGGAVGVRTS LQPFDISSAT TTTPSHTSFK SPGAGAGAGG  120
MAASLGFPFT SAQWKELERQ AMIYKYIMAS VPVPPELLMP ITRNFSESAA SPHSTLGRGS  180
IFNLRFSNGA DPEPGRCRRT DGKKWRCSRD VALNQKYCER HMHRGRPRSR KPVEVHADVN  240
SSHKKTRHCH ALPATPATLS SPMLTNTSCS QSQYLGSALD PRHQSPVFLY KSDSKASPFT  300
PLVSVPSFKE TRSLEWMAKG EAAPMATSDQ QWQQLMQTKI GLTIESSSSI CNSNASVFNQ  360
QYQEEPINLN SYTDFSAGAD NPGRDSINMF LNPGVISLQK PQTETPRAFI DAWSSAVTEN  420
PANTCNKSSV SSNGKLPLSS LTLSMGGDNG IENEMGRTEM GLRIVDSGGG GCEKPQLSTW  480
LTPASWAGLA PGGPLAEVLR PSSVAAASNP ASPHGGNGDS ISLSETAASS PSGVLQKPVV  540
SPSDSSGNSS PTLTASPAKP EITFPWLNQS KKIKRVFVFN YTSSLSMDLG ELIICLKPEN  600
YIN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.175160.0bud| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3924680.0FQ392468.1 Vitis vinifera clone SS0AFA5YI08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271355.30.0PREDICTED: growth-regulating factor 4 isoform X2
TrEMBLF6H7610.0F6H761_VITVI; Uncharacterized protein
STRINGVIT_16s0098g01080.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1109257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-40growth-regulating factor 2