PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01038142001
Common NameLOC100243890, VIT_05s0094g00480, VITISV_012226
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 137aa    MW: 15081.4 Da    PI: 10.1311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01038142001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-0633731055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       + R +++ ++++ L++l+ +      +K + a++L +A+eYI+ Lq
  GSVIVT01038142001 33 KERKEKVGERIAALQQLVSPF-----GKTDTASVLLEAMEYIRFLQ 73
                       678889999*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8142372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-52978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-102992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-123085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-63377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAEHKRSPIS VDQGGLTSLA PKRQKPDLTI STKERKEKVG ERIAALQQLV SPFGKTDTAS  60
VLLEAMEYIR FLQEQVKVLS APYLQSTTTA KMQELERYSL RSRGLCLVPI SYTVGVARSN  120
GADIWAPIKT DSSPKF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.27144e-99bud| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4696791e-68AM469679.1 Vitis vinifera contig VV78X048799.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273925.13e-96PREDICTED: transcription factor bHLH113
SwissprotQ7XJU24e-60BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A438HVU57e-95A0A438HVU5_VITVI; Transcription factor bHLH153
TrEMBLA5BSP97e-95A5BSP9_VITVI; Uncharacterized protein
STRINGVIT_05s0094g00480.t011e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-62bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]