PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01038090001

Common Name

VIT_05s0094g00020

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Nin-like

Protein Properties

Length: 862aa MW: 95168.4 Da PI: 6.3605

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01038090001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.3e-29	528	579	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl+ l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ GSVIVT01038090001 528 AEKNVSLSLLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 579 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	512	599	IPR003035	RWP-RK domain
Pfam	PF02042	5.5E-26	531	579	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.9E-22	729	819	No hit	No description
SMART	SM00666	2.1E-22	735	817	IPR000270	PB1 domain
PROSITE profile	PS51745	21.336	735	817	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-24	735	817	No hit	No description
Pfam	PF00564	2.2E-16	736	816	IPR000270	PB1 domain
CDD	cd06407	3.00E-33	736	816	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence Send to blast
MSPLQSMPYS DVFNFSDQNV ATNSVSDGRG TFNVAGSSFS SGDKMPFQPM DSQFGFSLNS 60 TEADNSNATR SNNSPFQQNF VSEIGSDARR SIRRPLAEKM LTALSFFKQS CEGGILAQVW 120 VPIRTGDHYM LSTYEQPYLL DQTLAGYREV SRAFTFSAED KSGLLPGLPG RVFMSKVPEW 180 TSNVGYYNLE EYLRVKHAAH HDVRGSIALP VFDPPEMSCC AVLELVTVEE KSNFDSEMEM 240 VCQALEAVNL KSTTPPRLQQ QYSNNQRAAL AEITDVLRAV CHAHRLPLAL TWIPCNFIRG 300 DADEIIRVRI KQSNTSSSGK CMLCIEETAC YVNDREMQGF VHACMKHYIE EGQGVSGKAL 360 QSNHPFFFQD VKKYDISEYP LVHHARKFGL NAAVAIRLRS TFTGNDDYIL EFFLPLSMKG 420 SPEQQLLLNN LSGTMQKMCR SLRRVSDTEL LGVECSKFGI ERGALTNLPP MPVSGSNSQL 480 ESSEFEFNLD RMALDASNLG VEGMVASVPR EKKTSGSRRQ QDKRRTVAEK NVSLSLLQQY 540 FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL SSVQGVEGGL 600 KFDPATGGLV AAGSVIQDFV VDGEQNLNPP RREQKTSNIA LVDCSEDSRS MDLESGSFRT 660 WGARSSTTTF PAAAAVAAAN EMDTVVDGDQ PTSSGMTASS NSSASMVHAS SSSSPSFERQ 720 LPARGKTKVE DGGSKITVKA TYKEDTIRFK FEPSAGCFQL YDEVARRFGL QIGTFQLKYL 780 DDEEEWVMLV NDADLQECLD ILEDVGSRSV KFLVRDTPAA MGSSGSSNCF LIVFSQIMNE 840 NTSFFMQQSL HFLPALIHFT S*

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence Send to blast

MSPLQSMPYS DVFNFSDQNV ATNSVSDGRG TFNVAGSSFS SGDKMPFQPM DSQFGFSLNS  60
TEADNSNATR SNNSPFQQNF VSEIGSDARR SIRRPLAEKM LTALSFFKQS CEGGILAQVW  120
VPIRTGDHYM LSTYEQPYLL DQTLAGYREV SRAFTFSAED KSGLLPGLPG RVFMSKVPEW  180
TSNVGYYNLE EYLRVKHAAH HDVRGSIALP VFDPPEMSCC AVLELVTVEE KSNFDSEMEM  240
VCQALEAVNL KSTTPPRLQQ QYSNNQRAAL AEITDVLRAV CHAHRLPLAL TWIPCNFIRG  300
DADEIIRVRI KQSNTSSSGK CMLCIEETAC YVNDREMQGF VHACMKHYIE EGQGVSGKAL  360
QSNHPFFFQD VKKYDISEYP LVHHARKFGL NAAVAIRLRS TFTGNDDYIL EFFLPLSMKG  420
SPEQQLLLNN LSGTMQKMCR SLRRVSDTEL LGVECSKFGI ERGALTNLPP MPVSGSNSQL  480
ESSEFEFNLD RMALDASNLG VEGMVASVPR EKKTSGSRRQ QDKRRTVAEK NVSLSLLQQY  540
FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL SSVQGVEGGL  600
KFDPATGGLV AAGSVIQDFV VDGEQNLNPP RREQKTSNIA LVDCSEDSRS MDLESGSFRT  660
WGARSSTTTF PAAAAVAAAN EMDTVVDGDQ PTSSGMTASS NSSASMVHAS SSSSPSFERQ  720
LPARGKTKVE DGGSKITVKA TYKEDTIRFK FEPSAGCFQL YDEVARRFGL QIGTFQLKYL  780
DDEEEWVMLV NDADLQECLD ILEDVGSRSV KFLVRDTPAA MGSSGSSNCF LIVFSQIMNE  840
NTSFFMQQSL HFLPALIHFT S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.5220	0.0	bud\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM440881	0.0	AM440881.2 Vitis vinifera contig VV78X076853.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010650663.1	0.0	PREDICTED: protein NLP9 isoform X1
Refseq	XP_010650664.1	0.0	PREDICTED: protein NLP9 isoform X1
Refseq	XP_010650665.1	0.0	PREDICTED: protein NLP9 isoform X1
Refseq	XP_010650666.1	0.0	PREDICTED: protein NLP9 isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	F6HB00	0.0	F6HB00_VITVI; Uncharacterized protein
STRING	VIT_05s0094g00020.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01038090001

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]