PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01037958001 | ||||||||
Common Name | VIT_10s0092g00230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 260aa MW: 28409.1 Da PI: 9.0098 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.3 | 2.1e-12 | 95 | 119 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ V GSVIVT01037958001 95 CNGCRSILVYPRGATNVCCALCNSV 119 ***********************98 PP | |||||||
2 | zf-LSD1 | 48.9 | 1.1e-15 | 134 | 158 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV GSVIVT01037958001 134 CGGCRTLLMYTRGATSVRCSCCHTV 158 ************************9 PP | |||||||
3 | zf-LSD1 | 46.6 | 5.6e-15 | 173 | 197 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V GSVIVT01037958001 173 CGNCRTTLMYPYGAPSVKCAVCHYV 197 **********************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.7E-10 | 92 | 122 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 9.21E-5 | 95 | 196 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.8E-10 | 95 | 119 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.3E-17 | 131 | 160 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.5E-13 | 134 | 158 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.6E-12 | 170 | 200 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.3E-14 | 173 | 197 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MLFKCIYNFY LKILVHFDTK YFYLTILIIS FMILYLNFNA QYPFLNLQFS KSDSTKSTTF 60 SHRIFAFNSS PFPFNCSSSE RKFSYQSAMQ SHLMCNGCRS ILVYPRGATN VCCALCNSVT 120 SVPPPGLEMA QLICGGCRTL LMYTRGATSV RCSCCHTVNL APAPSNQVAH VNCGNCRTTL 180 MYPYGAPSVK CAVCHYVTSV GMVNVRVPIP VHRPNAAAIS ASTPSTSSSQ TVVVKNPMSV 240 DESGKLVSNV VVGVTTEKK* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.29016 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FQ397968 | 0.0 | FQ397968.1 Vitis vinifera clone SS0AEB5YC04. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010655864.1 | 1e-120 | PREDICTED: protein LSD1 | ||||
Swissprot | P94077 | 3e-72 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | D7U8E8 | 0.0 | D7U8E8_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0092g00230.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-69 | LSD family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01037958001 |
Publications ? help Back to Top | |||
---|---|---|---|
|