PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01037853001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22742 Da PI: 7.1252 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.7 | 4.9e-30 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ ++ +++++pe +r+++++sl++eA+ r+ +Pv Gavg+++++++++ GSVIVT01037853001 2 SCSGCRVLRKGCSENCMLRQCLewidsPEAQANATIFVAKFFGRADLMAFISTVPERQRPCLFQSLLFEACGRTVNPVFGAVGLLWTGNWHV 93 6******************************************************************************************* PP DUF260 88 eqlkaelallk 98 +q+++e++l++ GSVIVT01037853001 94 CQSAVETVLRG 104 *****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.796 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSCSGCRVLR KGCSENCMLR QCLEWIDSPE AQANATIFVA KFFGRADLMA FISTVPERQR 60 PCLFQSLLFE ACGRTVNPVF GAVGLLWTGN WHVCQSAVET VLRGGELAPL PEFLDLEGVE 120 TPVSEAYLAE EYLSKPGDTD YRLTDVNLRP KHGSATGMKI EETEERRPRT SPDDSATMTN 180 CNKLRSYYKT IKSMKLRGSP TTTK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430297 | 1e-180 | AM430297.2 Vitis vinifera contig VV78X120137.25, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002264010.1 | 1e-132 | PREDICTED: LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 8e-65 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A438CU82 | 1e-130 | A0A438CU82_VITVI; LOB domain-containing protein 38 | ||||
TrEMBL | F6H665 | 1e-130 | F6H665_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0091g00670.t01 | 1e-131 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 6e-67 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01037853001 |