PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037777001
Common NameLOC100250258, VIT_19s0090g01740
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 527aa    MW: 58253.9 Da    PI: 5.5705
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037777001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.18.9e-1391565251373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+e+L++cA+av+++d  +a++ +++l++++s +g+p+qRl ay++e+L arla s+s++ykal+++e +   s+e l++++l++e++P++k
  GSVIVT01037777001 156 LKEVLVSCAKAVADNDILRAEWGISELRQMVSVSGEPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPA---SAELLSYMHLLFEICPYFK 244
                        5789*****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f+h+  N aI ea++ e++vHiiDf+isqG+QW++L+qaLa+Rp+gpp++RiTg+++++s   +    + +g+rL++fAe+++vpfef++ +
  GSVIVT01037777001 245 FGHMSGNGAIAEAMKDESKVHIIDFQISQGVQWITLIQALAARPGGPPQIRITGIDDSTSAyaRGGGPSIVGQRLSRFAESCKVPFEFHA-A 335
                        *********************************************************998888888999*********************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        + +  +++le+L+++pgEalaVn+++ lh+++desv+++++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+ea++yy a+f+s++++
  GSVIVT01037777001 336 TISGCEVQLEDLELRPGEALAVNFAFILHHMPDESVDTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLSRFIEAMNYYLAVFESIDVT 427
                        778999************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpr+++eri+ E+++l+reivn++acegaer+erhe l+kW++r+ +aGF+p pls+++++++k+ll++++++ y++ee++g+l+lgW+dr+
  GSVIVT01037777001 428 LPRDHKERINAEQHCLAREIVNIIACEGAERVERHELLGKWKSRFLMAGFTPHPLSSYVNATIKTLLQNYSDK-YSLEEKDGALYLGWMDRA 518
                        ***********************************************************************55.****************** PP

               GRAS 367 LvsvSaW 373
                        Lv+++aW
  GSVIVT01037777001 519 LVAACAW 525
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.027130507IPR005202Transcription factor GRAS
PfamPF035143.1E-136156525IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MQASQKHGIS GRSGSFYSQP VPQDDQGMHF SGPTYCEQYG THESSSATGS FPIYNSPSTV  60
SFSPEGSPAS QQDSQTYPSD QLHSPENGHG SPISGSCLTD DVNELRHKLR ELETAMLGPD  120
SDILDVHEVI PRELNKISLE REKWKQMMEV ISRGDLKEVL VSCAKAVADN DILRAEWGIS  180
ELRQMVSVSG EPIQRLGAYM LEGLVARLAA SGSSIYKALR CKEPASAELL SYMHLLFEIC  240
PYFKFGHMSG NGAIAEAMKD ESKVHIIDFQ ISQGVQWITL IQALAARPGG PPQIRITGID  300
DSTSAYARGG GPSIVGQRLS RFAESCKVPF EFHAATISGC EVQLEDLELR PGEALAVNFA  360
FILHHMPDES VDTQNHRDRL LRLVKSLSPK VVTLVEQESN TNTAPFLSRF IEAMNYYLAV  420
FESIDVTLPR DHKERINAEQ HCLAREIVNI IACEGAERVE RHELLGKWKS RFLMAGFTPH  480
PLSSYVNATI KTLLQNYSDK YSLEEKDGAL YLGWMDRALV AACAWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-661605258374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.65540.0bud| flower| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4350490.0AM435049.2 Vitis vinifera contig VV78X087117.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274103.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_010644523.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLF6HER60.0F6HER6_VITVI; Uncharacterized protein
STRINGVIT_19s0090g01740.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]