PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037775001
Common NameVIT_19s0090g01720
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 553aa    MW: 60334.4 Da    PI: 6.7634
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037775001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.7e-32198255260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  er++ d+++vei+Y+g+H+h+k
  GSVIVT01037775001 198 EDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAH-DGQIVEIIYKGTHDHPK 255
                        7***************************************9.***************85 PP
2WRKY106.31.6e-33367425159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSVIVT01037775001 367 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 425
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27192256IPR003657WRKY domain
SuperFamilySSF1182901.57E-24196256IPR003657WRKY domain
SMARTSM007745.7E-34197255IPR003657WRKY domain
PROSITE profilePS5081122.768198256IPR003657WRKY domain
PfamPF031062.2E-24198254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37352427IPR003657WRKY domain
SuperFamilySSF1182902.22E-29359427IPR003657WRKY domain
PROSITE profilePS5081138.825362427IPR003657WRKY domain
SMARTSM007743.1E-39367426IPR003657WRKY domain
PfamPF031063.3E-26368425IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MSPAKLPISR SPCLTIPSGL SPSSFLDSPV LLSNMKVEPS PTTGSFAKPQ MIHGSVGSSM  60
FSSTSNCSNS NTFDERKSGS FEFKPHTVSN SASGLFLVGS PVSADLNHQQ VKPFIPVQAQ  120
HPDLSLMPSP TVKSEMMAPS NELSLCSPGH MVTSLESAPA EVDSDELNQQ GHPNNGVQAS  180
QSDQKGIGPS AVVERSSEDG YNWRKYGQKH VKGSEFPRSY YKCTHPNCEV KKLFERAHDG  240
QIVEIIYKGT HDHPKPQPSR RYASGAILPV QEERPDKVSS LIGRDDKSPS IYGQMAHNID  300
PNGTPELSPV AANDDVVEGA ILDEVDEDDP LSKRRKMEIG GIDVTPVVKP IREPRVVVQT  360
LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKAVITTYEG  420
KHNHDVPTAR TNSHDAAGQV ALNGMPMIRS EENDTISLDL GVGINSASEN RPNVQHQTLH  480
AELVLTQTRT NNSNFQAVQA TPVSRYYGVL NNGMDLYGFR ENLGESRSFE TPPLNHSSNP  540
CPQNMGRILM GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37198427877Probable WRKY transcription factor 4
2lex_A7e-37198427877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4350490.0AM435049.2 Vitis vinifera contig VV78X087117.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644520.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLF6HER40.0F6HER4_VITVI; Uncharacterized protein
STRINGVIT_19s0090g01720.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein