PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037712001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 253aa    MW: 27600.4 Da    PI: 10.2447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037712001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.7e-2183132255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+++eeAa+a++aa++ l+g
  GSVIVT01037712001  83 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSPEEAARAYDAAARTLRG 132
                        59*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.68383140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-3283141IPR001471AP2/ERF domain
SMARTSM003806.9E-3683146IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2283140IPR016177DNA-binding domain
PfamPF008474.5E-1483132IPR001471AP2/ERF domain
CDDcd000184.54E-2183142No hitNo description
PRINTSPR003671.6E-108495IPR001471AP2/ERF domain
PRINTSPR003671.6E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKKKRKKHKK ICEEDERREG GVLCWWCLCS PFCYVISSKP SSPLSFLHHR TSNMRRGRAA  60
PTATLATSAA GGAGGSGFVK DMRYRGVRKR PWGRFAAEIR DPWKKTRVWL GTFDSPEEAA  120
RAYDAAARTL RGPKAKTNFP AVSGAAVAFQ EQQIHAQRPT SSGMSSTVES FSGPRPAPAN  180
LPPATLRRHP RSPPLLPDDC HSDCDSSSSV IDNGDIAAAT SVRKPLPFDL NVMPSDDDEL  240
IMGDLHSTAL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-19831401472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
119KKKRKKHKK
226KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.21780.0bud| fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4241530.0AM424153.1 Vitis vinifera contig VV78X007616.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278022.11e-108PREDICTED: ethylene-responsive transcription factor 3
SwissprotO803396e-49ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLF6HES91e-124F6HES9_VITVI; Uncharacterized protein
STRINGVIT_19s0090g01080.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-32ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]