PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037686001
Common NameLOC100245129, VIT_19s0090g00840
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 497aa    MW: 53795.9 Da    PI: 9.4323
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037686001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30244302259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+rsaed +v+++tYeg+Hnh+
  GSVIVT01037686001 244 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtACPVRKQVQRSAEDRTVLITTYEGHHNHP 302
                        7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-33228304IPR003657WRKY domain
SuperFamilySSF1182903.01E-27236304IPR003657WRKY domain
PROSITE profilePS5081129.482238304IPR003657WRKY domain
SMARTSM007745.4E-36243303IPR003657WRKY domain
PfamPF031061.9E-26245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDFFAQKETA RVDVKRETTA HDGLVQGFHI NTGLNLHLAS GGSEKSSVDG GTSPSNKEKL  60
NMSDKMVGLR AELENMNKEN KQLRAMLSQV NNNYSALQMH VVTLMQRQHN RRAEISLANE  120
VNTEGKVGER NRNETIVPRQ FMDLGRASMA EKDESSPSWS GSRSPQTNED ASRESRRRKT  180
GSTSNENKDG GREESSDQSL QGGLPNKVPK FNCSQNVEQA SEAMSMMRKA RVSVRARSEA  240
SMISDGCQWR KYGQKMAKGN PCPRAYYRCT MATACPVRKQ VQRSAEDRTV LITTYEGHHN  300
HPLPPAAMAM ASTTSAAATM LLSGSMPSSD GIMSSSFHSR TMFPCSPSLA TISASAPFPT  360
ITLDLTHSPN LLQHQRPNAQ FHVPFQNLPQ NFAPGSHAFN PVLHSQSKFS ALQSSPEMQP  420
PQVGTEQVLK PSSSSSDTVT AATAAITADP NFTAALVAAI TSIIGNVHPN NSSNSSTNTR  480
STNVDNNIGN SNLVGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22230306176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179SRRRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.177160.0bud| cell culture
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4488560.0AM448856.2 Vitis vinifera contig VV78X105691.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644476.10.0PREDICTED: probable WRKY transcription factor 31 isoform X1
SwissprotQ9XEC31e-114WRK42_ARATH; WRKY transcription factor 42
TrEMBLF6HEQ50.0F6HEQ5_VITVI; Uncharacterized protein
STRINGVIT_19s0090g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-89WRKY family protein