PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037575001
Common NameLOC100259827, VIT_06s0009g00410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 574aa    MW: 62583.1 Da    PI: 7.0413
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037575001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-093493861954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  GSVIVT01037575001 349 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 386
                        554459******************************88 PP
2BELL120.76.4e-39213284172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +rqelq+kkakL+++l+eV++rY+qy++q+q+v+ssFe++ag gsak+Yt+lAl++iS++FrcLkdai+ qi
  GSVIVT01037575001 213 QRQELQMKKAKLVNMLDEVEQRYRQYHQQMQIVVSSFEQAAGQGSAKSYTALALQTISKQFRCLKDAISAQI 284
                        69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-64140282IPR006563POX domain
PfamPF075267.6E-49145281IPR006563POX domain
PROSITE profilePS5007112.131327390IPR001356Homeobox domain
CDDcd000861.74E-12330391No hitNo description
SMARTSM003892.3E-9330394IPR001356Homeobox domain
SuperFamilySSF466895.13E-17331396IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-29333396IPR009057Homeodomain-like
PfamPF059202.3E-18347386IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MATYFHGSSE IQADGLQTLY LMNPNYIGYS DTQQPSAANM LFLNATPNSL NPTNLPNMSL  60
QNQHFVGIPL PNMGSANSDD QNRSSLHAQP EMSSLQGIVP RFHYNLWGST DQNPTGNQPQ  120
IPTAVAAASS GASAVSNGIS GMQSVLLGSK YLKAAQQLLD EVANVGKGIK TDSGEETKER  180
EKVNTISVAA STGEALSGGE SSAKRGAELS TAQRQELQMK KAKLVNMLDE VEQRYRQYHQ  240
QMQIVVSSFE QAAGQGSAKS YTALALQTIS KQFRCLKDAI SAQIKATSSS LGEEDCSGGK  300
VEGSRLRFVD HQLRQQRALQ QLGMIQHNAW RPQRGLPERA VSVLRAWLFE HFLHPYPKDS  360
DKHMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEEI KDQEHNEKST TQNASPAELS  420
NSTMSTSPMG GSLQVQAGFN LIGSSEIEGM VQRSPKKPRS YDIQSSPSSI LSMDMEMKPA  480
INNGGGFGAY SPIGDIGRFN PEQLAPRFHG NSVSLTLGLP HCENLSLLEM GNGEPDYCGI  540
NAAQPSHSNA AYDSINIQNR KRFAAQLLPD FVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16336394563Homeobox protein Meis2
3k2a_B1e-16336394563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.128500.0cell culture| flower| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4413730.0AM441373.2 Vitis vinifera contig VV78X099779.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275098.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-142BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLF6HAC50.0F6HAC5_VITVI; Uncharacterized protein
STRINGVIT_06s0009g00410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-131BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]