PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037375001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 401aa    MW: 45744.6 Da    PI: 6.4429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037375001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.92.9e-78472551216
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lLl+cA++v+sg+le+++ +L+++s+las dgd+mqR+aayfteALa r+++++s+l kal++++ s    se + ++klf+e++P+lk
  GSVIVT01037375001  47 LIHLLLTCANHVASGSLENVNIALEQISQLASADGDTMQRIAAYFTEALADRILKTWSGLHKALNSTRIS--FPSEDILVRKLFFELFPFLK 136
                        689*************************************************************999887..5999**************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        ++++++N++I ea+ege++vHiiD++  +++QW+aLlqaL++Rpegpp+lRiTg+++    +ke le++++rL++ Ae+l++pf+fn+ +++
  GSVIVT01037375001 137 MAYVITNHTIIEAMEGEKMVHIIDLNSAEPAQWIALLQALSARPEGPPHLRITGIHP----QKEVLEQMAHRLTEEAEKLDIPFQFNP-IVS 223
                        *********************************************************....9**************************.799 PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrllde 216
                        +le+l++e+Lrvk+gEala+++vlqlh++l+ 
  GSVIVT01037375001 224 KLENLDFEKLRVKTGEALAISSVLQLHSFLAY 255
                        9****************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.40521400IPR005202Transcription factor GRAS
PfamPF035141.0E-7547255IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAPMDERSSS VTSSPLQLFS MMSPSPSLGS PYPWLRELKS EERGLCLIHL LLTCANHVAS  60
GSLENVNIAL EQISQLASAD GDTMQRIAAY FTEALADRIL KTWSGLHKAL NSTRISFPSE  120
DILVRKLFFE LFPFLKMAYV ITNHTIIEAM EGEKMVHIID LNSAEPAQWI ALLQALSARP  180
EGPPHLRITG IHPQKEVLEQ MAHRLTEEAE KLDIPFQFNP IVSKLENLDF EKLRVKTGEA  240
LAISSVLQLH SFLAYDDEFL RKKSPLASKN SNGVQLQRVR QKWMAFLMHF LLDFIFLRLF  300
SICFHLFIDS RDDDCMSCEH CTTTLLILGI FFSFFSSKLL CFIFVILGVC KIFDHLSKSF  360
FKPCLVGFCL FLSGFYLFIY FLWKPIELKY DIELISVYDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-39302431216Protein SCARECROW
5b3h_D1e-39302431216Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4322740.0AM432274.2 Vitis vinifera contig VV78X112647.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266911.30.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR81e-133SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A438GV110.0A0A438GV11_VITVI; Scarecrow-like protein 3
STRINGVIT_06s0009g02390.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-126scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]