PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01037362001 | ||||||||
Common Name | LOC100246221, VIT_06s0009g02480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 488aa MW: 53226.2 Da PI: 4.8891 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed l+d+v+++G g+W++++++ g+ R++k+c++rw ++l GSVIVT01037362001 31 KGPWTSAEDAVLIDYVTKHGEGNWNAVMKHSGLSRCGKSCRLRWANHL 78 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ GSVIVT01037362001 84 KGAFTPEEEHRIIELHARMGNK-WARMAAELP-GRTDNEIKNYWNT 127 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.56 | 26 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-30 | 29 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-9 | 34 | 78 | No hit | No description |
PROSITE profile | PS51294 | 25.337 | 79 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 84 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 86 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.08E-10 | 86 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 488 aa Download sequence Send to blast |
MAGDQEGSPL GEEEVGSGGK SGGGGGGPLK KGPWTSAEDA VLIDYVTKHG EGNWNAVMKH 60 SGLSRCGKSC RLRWANHLRP DLKKGAFTPE EEHRIIELHA RMGNKWARMA AELPGRTDNE 120 IKNYWNTRIK RLQRAGLPIY PPDVSMKALN GSQQSQSMGS LTTGEASPSD LLQGNSFEIP 180 AVQFKNLQNP GIYPYPPTYF DILPSGSLTQ NLGSSDGQNF MFPAMHPPKR FRESETFFSG 240 LNDDFSNAFP ALDLYDDTCG LPGSHALSNG NFSSEPISGA MKVELPSLQY SEAQVGNWGS 300 LFPMPSIESV DTLIQSPQTE QIQVDCLSPS KSGLLEAVVY ESRNLKRKYD SCHQASNTAI 360 ECNDVVGNLP LNPYEAEWNV YVDPTSPLGN SAASVFNVHT PISGSSPDEP QSIETLLGCK 420 VHPEPVNQIA THYDGKKETP NQMDLSRPDR LLDADWFGPD TERGREQATW RDALNALLGE 480 DINSNKK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 29 | 131 | 5 | 106 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 17 | 25 | GGKSGGGGG |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.15869 | 0.0 | cell culture| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM469349 | 0.0 | AM469349.1 Vitis vinifera contig VV78X097754.15, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651548.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
TrEMBL | F6HAD1 | 0.0 | F6HAD1_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0009g02480.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06100.3 | 5e-86 | myb domain protein 33 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01037362001 |
Entrez Gene | 100246221 |