PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037137001
Common NameLOC100258449, VIT_18s0089g00900
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Whirly
Protein Properties Length: 232aa    MW: 25780.6 Da    PI: 9.8074
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037137001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly173.74.1e-54641982137
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        vyk+ka+l+v +v+p+f+ ldsg lk++r+G ++l++ +a++erkydWekkq falsa ev++l++l++ + ceffhdp++k+sn+G+vrk+
  GSVIVT01037137001  64 VYKGKASLTVYPVLPKFSRLDSGGLKVDRHGVMMLQFSPAVGERKYDWEKKQFFALSAVEVGSLLSLSPGGGCEFFHDPSMKTSNAGQVRKS 155
                        9******************************************************************************************* PP

             Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                        l+v+ + dG  +f++lsv n+++k+ne++ vP++ aefav++++
  GSVIVT01037137001 156 LSVKSM-DGGSYFLSLSVVNNIQKTNERLAVPLTAAEFAVMQTA 198
                        ****98.6667******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.105.3E-7250219IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.98E-5956222IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.6E-5664197IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MMKLKQLLQS RTHLSENLLH GKPGDIRNPS WLHAFTSRVS LSTATDHFAD KGNYPDRVYA  60
PYCVYKGKAS LTVYPVLPKF SRLDSGGLKV DRHGVMMLQF SPAVGERKYD WEKKQFFALS  120
AVEVGSLLSL SPGGGCEFFH DPSMKTSNAG QVRKSLSVKS MDGGSYFLSL SVVNNIQKTN  180
ERLAVPLTAA EFAVMQTACS FALPHILGWD RYMNQKLPRT EATPSTLEWD R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A5e-79492172171StWhy2
3n1i_A5e-79492172171protein StWhy2
3n1j_A5e-79492172171Protein StWhy2
3n1k_A5e-79492172171protein StWhy2
3n1l_A5e-79492172171protein StWhy2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.152160.0cell culture| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4833581e-145AM483358.2 Vitis vinifera contig VV78X174928.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267315.11e-174PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0343e-85WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLD7SMW11e-173D7SMW1_VITVI; Uncharacterized protein
STRINGVIT_18s0089g00900.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-72WHIRLY 2