PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037113001
Common NameLOC100248262, VIT_18s0089g01120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 324aa    MW: 37007.3 Da    PI: 8.9677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037113001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-5381371129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+d
  GSVIVT01037113001   8 VPPGFRFHPTDEELLHYYLKKKVSYQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRD 98 
                        69****************************.99**************963433332556********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  GSVIVT01037113001  99 KCIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                        ****9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-607159IPR003441NAC domain
PROSITE profilePS5100558.3788159IPR003441NAC domain
PfamPF023654.1E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTSSSGGVPP GFRFHPTDEE LLHYYLKKKV SYQKFDMEVI REVDLNKMEP WELQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDAD DSPGNPSEDG WVVCRVFKKK NLFKLGTEGG GSSSASMAGL  180
DQQLNINTSS TTDHPRSFTH RDTQYLPRPQ SLPFHYSHIP TPQYSHNLQS QTLLPPHKPI  240
AYDFSPLPSD SPPGAHHHQH MVGPGREESL SEWSMLDRLV TSHLSHEDSS SKGVRFEDGN  300
GSSVQQMNQL SLRGEMDFWG YGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-53816117167NO APICAL MERISTEM PROTEIN
1ut4_B7e-53816117167NO APICAL MERISTEM PROTEIN
1ut7_A7e-53816117167NO APICAL MERISTEM PROTEIN
1ut7_B7e-53816117167NO APICAL MERISTEM PROTEIN
3swm_A9e-53816120170NAC domain-containing protein 19
3swm_B9e-53816120170NAC domain-containing protein 19
3swm_C9e-53816120170NAC domain-containing protein 19
3swm_D9e-53816120170NAC domain-containing protein 19
3swp_A9e-53816120170NAC domain-containing protein 19
3swp_B9e-53816120170NAC domain-containing protein 19
3swp_C9e-53816120170NAC domain-containing protein 19
3swp_D9e-53816120170NAC domain-containing protein 19
4dul_A7e-53816117167NAC domain-containing protein 19
4dul_B7e-53816117167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4668081e-171AM466808.1 Vitis vinifera contig VV78X084098.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264688.10.0PREDICTED: protein BEARSKIN2
SwissprotQ9SV871e-139BRN2_ARATH; Protein BEARSKIN2
TrEMBLF6GVX30.0F6GVX3_VITVI; Uncharacterized protein
STRINGVIT_18s0089g01120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-138NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]