PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037095001
Common NameVIT_18s0089g01280, VITISV_009478
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family DBB
Protein Properties Length: 206aa    MW: 22812.6 Da    PI: 5.049
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037095001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-07447542
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        C+ +++ e++  C  ++  lC  C +  H        H++vpl
  GSVIVT01037095001  4 PCDICGNVEAEVLCSADEAVLCWGCDERVHTAnklsqkHQRVPL 47
                       6******99*********************65889999999986 PP
2zf-B_box33.58.5e-115899237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       + + C+ ++ek   +fC +++ llC++C +++H+       H
  GSVIVT01037095001 58 QLPPCDICQEKSGYFFCLEDRALLCKNCDVSTHSTnsyvssH 99
                       7899*****************************665555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.338147IPR000315B-box-type zinc finger
CDDcd000213.79E-8347No hitNo description
SMARTSM003365.1E-10447IPR000315B-box-type zinc finger
PfamPF006431.2E-5447IPR000315B-box-type zinc finger
SuperFamilySSF578451.56E-55197No hitNo description
PROSITE profilePS501199.45657104IPR000315B-box-type zinc finger
SMARTSM003361.5E-1257104IPR000315B-box-type zinc finger
PfamPF006431.2E-85899IPR000315B-box-type zinc finger
CDDcd000215.83E-86096No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKIPCDICGN VEAEVLCSAD EAVLCWGCDE RVHTANKLSQ KHQRVPLLKH PPSTSSSQLP  60
PCDICQEKSG YFFCLEDRAL LCKNCDVSTH STNSYVSSHR RFVISGIKVA LQSVTNNYRT  120
GCNSRTYPLD MPNSNSSSVN FPMDREKKPE MTTEVASTSS DMVAMFSGEI HLATGPEWTL  180
DEILGSNDFD YYEFSDMGQS RISSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4768630.0AM476863.1 Vitis vinifera contig VV78X233609.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071822.11e-154PREDICTED: B-box zinc finger protein 23
TrEMBLA0A438HGR51e-153A0A438HGR5_VITVI; B-box zinc finger protein 22
TrEMBLA5BZK61e-153A5BZK6_VITVI; Uncharacterized protein
STRINGVIT_18s0089g01280.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-53light-regulated zinc finger protein 1