PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01037024001 | ||||||||
Common Name | LOC100248056, VIT_03s0088g00600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24212.1 Da PI: 9.7955 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 1e-21 | 21 | 64 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +sn qvtfskRr g++KKA+EL++LC+ae a+i+fs+ kly + GSVIVT01037024001 21 ESNLQVTFSKRRSGLFKKASELCTLCGAETAIIVFSPGKKLYSF 64 7899**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.0E-29 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.988 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-26 | 9 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.40E-34 | 9 | 77 | No hit | No description |
PRINTS | PR00404 | 4.4E-18 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-18 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-18 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MATVRKSKGR QKVEMTKMTK ESNLQVTFSK RRSGLFKKAS ELCTLCGAET AIIVFSPGKK 60 LYSFGHPCVE SIIDRFLMRN PLPNSGALQL FEAHRTTNVR NLNVQLTQVV NQLEGEKKRG 120 EALTQMWKAC KPQCWWAAPI EEFSLEQLEL LKVSLEDLRR KVARQADELM IEAKNPPAFF 180 PGNSVGTIMP YDAQMAGFDP YSHKYNFGYG GPFL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM445733 | 0.0 | AM445733.2 Vitis vinifera contig VV78X035203.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270922.1 | 1e-161 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-63 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7T3N0 | 1e-160 | D7T3N0_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0088g00600.t01 | 1e-160 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-65 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01037024001 |
Entrez Gene | 100248056 |
Publications ? help Back to Top | |||
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