PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036776001
Common NameVIT_19s0085g00350
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HB-other
Protein Properties Length: 1189aa    MW: 133802 Da    PI: 7.9765
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036776001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.31.1e-122575757
                       --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        t+ ql++Le+l+ +++yp+++ +++ A+ lgLt +qV+ WF  rR kek+
  GSVIVT01036776001 25 KTPLQLKTLESLYSEDNYPTQRVMKDYAAALGLTYKQVRGWFFERRRKEKN 75
                       5899*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.5E-101980IPR001356Homeobox domain
SuperFamilySSF466893.94E-121976IPR009057Homeodomain-like
CDDcd000864.91E-102377No hitNo description
Gene3DG3DSA:1.10.10.608.9E-122478IPR009057Homeodomain-like
PfamPF000465.5E-102575IPR001356Homeobox domain
PROSITE profilePS5007113.1022676IPR001356Homeobox domain
PROSITE profilePS5082711.939379438IPR018501DDT domain
SMARTSM005714.1E-8379438IPR018501DDT domain
PfamPF027911.0E-8381435IPR018501DDT domain
PfamPF156126.5E-8694733IPR028942WHIM1 domain
PfamPF156131.2E-10827901IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1189 aa     Download sequence    Send to blast
MGTNEVAIIE DHGTINTNTN SIRRKTPLQL KTLESLYSED NYPTQRVMKD YAAALGLTYK  60
QVRGWFFERR RKEKNENGMG VSSRNMSSSS TYNRACLGAH HWHCFRNHDS RAVERGKILN  120
EDLSTTDYIL KKVFRKDGPP LGVEFDSLPS SSFCHCTDSR NSHRTCQENQ TSSKRRKVVV  180
SKPAVLHQQF CNNKSAPAKI HGIGKGLMTV WRATNPGAGD FPTGIDFADG QVAAVSPTST  240
SILRKSLIKK KKPRKQSSVT KWKSVGGKLN DKKKPSRKRG KVECNKDVNQ KKPNKEKCEL  300
ALEEGKSQEH LDQFAMLMDD EELELQESQA GPNPVTCSAH FATNGLHGCS LCKDLLAKFP  360
PNAVKMKQPF CMQPWDSSPE LVKKMFKVLH FLYTYSVVVD VCPFTLDEFA QAFHDEDSLL  420
LGKVHLALLN LLLSDVETEL SSGFLPHVIK NCKFLGLLQS VGQNEFVLKF WKRSLNPLTW  480
TEILRQVLVA AGFGSRKGTL RREALDKKAG LKGRVVPFCL MVDCLLKCLL PFYFPLAPMF  540
ELNPMVKYGL RPGTLKGELF SILSNQGNNG MKVPDLARCV QISELNLAGT TDELELLIYS  600
TLSSDITLYE KISSSSYRLR ITSHTNEAEN FQSDTDDSGS IDDDSKDSRK YSSSDDSDSD  660
SGTSNLGKLN YMNHHKQRNG MLTIYTEIDE SNPGEVWLLG LMEGEYSDLS IEEKLNALMA  720
LVDLVSGGSS IRMEDLTKAV VEYVPNIHHY GSGAKIKRSY TKQHNLPTPA RGHFGQMLGG  780
KEINPSSELC PVDSSTSISK FHGKEKFSSK RKETREAEVG LDLHPMQSVF LGPDRRYNRY  840
WLFLGPCNAN DPGHKRVYFE SSEDGHWEVI DTEEAFCALL SVLDGRGKRE AFLLASLEKR  900
KASLCQEMSS RIAIHSGSTS LTQYDRSDLY MIREDSSSPV SDIVDNPCAT DITNDFLASS  960
GAIVLGVGKK GEEQKQRWRR LQEFDAWIWS SFYSDLNAVK HGKRTYLDSL ARCESCHDLY  1020
WRDEKHCKTC HTTFELDFDL EEKYAIHIAT CREKEDNDMF PKHKVLSSQL QSLKAAIHAI  1080
ESVMPEDALV EAWSKSAHKL WVRRLRRTSY LTELLQVLAD FVGAIKEDWL CQSDVVLGSN  1140
NLLEEIVVSF STMPQTSSAV ALWLVKLDAL IAPHLERVQL HSKKRTRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873RRRKEK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.86560.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4880920.0AM488092.2 Vitis vinifera contig VV78X182913.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010645135.10.0PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
RefseqXP_010645136.10.0PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLF6H9W60.0F6H9W6_VITVI; Uncharacterized protein
STRINGVIT_19s0085g00350.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP916177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator