PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036712001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39357.4 Da PI: 7.0954 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.4e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl GSVIVT01036712001 13 RGLWSPEEDEKLIRYITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.2e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ GSVIVT01036712001 66 RGSFSAQEEQSIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.607 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.63E-11 | 16 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.041 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-10 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGHRCCSKQK VKRGLWSPEE DEKLIRYITA HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPELKRGSFS AQEEQSIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL 120 DPKTHNLISS HQRNTSNKVV CSLPQPHQQP FPVFTVNQQM TDDASMEVNR LPPFVTLPPL 180 PPTQPSLQQT MAIPNSEYQN PNPVWTAKDQ SSQYTISFPC GSSIGSTPII SSSSSSSVNP 240 FGFGFLDENL IWNAHVEPLE GPRLEQVQTH QYQDQHDQQK NKINIGEMGN DHEQKCGQDI 300 DVSFDSSSFD LEFVESTLLS GAICQVLSLV SILYTSMVFN ICQADCMYE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ379115 | 0.0 | FQ379115.1 Vitis vinifera clone SS0AEB11YG23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265355.2 | 0.0 | PREDICTED: transcription factor MYB26 | ||||
TrEMBL | A5BNJ7 | 0.0 | A5BNJ7_VITVI; Uncharacterized protein | ||||
STRING | VIT_19s0085g00940.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 3e-86 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036712001 |