PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036712001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 350aa    MW: 39357.4 Da    PI: 7.0954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036712001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-181360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  GSVIVT01036712001 13 RGLWSPEEDEKLIRYITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                       788*******************************************97 PP

2Myb_DNA-binding50.74.2e-1666109146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  GSVIVT01036712001  66 RGSFSAQEEQSIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                        899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-26563IPR009057Homeodomain-like
PROSITE profilePS5129424.607864IPR017930Myb domain
SuperFamilySSF466894.12E-2910107IPR009057Homeodomain-like
SMARTSM007174.7E-131262IPR001005SANT/Myb domain
PfamPF002495.9E-161360IPR001005SANT/Myb domain
CDDcd001673.63E-111660No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2464116IPR009057Homeodomain-like
PROSITE profilePS5129420.04165115IPR017930Myb domain
SMARTSM007179.3E-1565113IPR001005SANT/Myb domain
PfamPF002491.2E-1466109IPR001005SANT/Myb domain
CDDcd001671.08E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGHRCCSKQK VKRGLWSPEE DEKLIRYITA HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPELKRGSFS AQEEQSIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPKTHNLISS HQRNTSNKVV CSLPQPHQQP FPVFTVNQQM TDDASMEVNR LPPFVTLPPL  180
PPTQPSLQQT MAIPNSEYQN PNPVWTAKDQ SSQYTISFPC GSSIGSTPII SSSSSSSVNP  240
FGFGFLDENL IWNAHVEPLE GPRLEQVQTH QYQDQHDQQK NKINIGEMGN DHEQKCGQDI  300
DVSFDSSSFD LEFVESTLLS GAICQVLSLV SILYTSMVFN ICQADCMYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3791150.0FQ379115.1 Vitis vinifera clone SS0AEB11YG23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265355.20.0PREDICTED: transcription factor MYB26
TrEMBLA5BNJ70.0A5BNJ7_VITVI; Uncharacterized protein
STRINGVIT_19s0085g00940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-86myb domain protein 67