PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036711001
Common NameVIT_19s0085g00950
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 282aa    MW: 32077.6 Da    PI: 5.2474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036711001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.63.9e-5661331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeelv +yL +k++g ++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd+
  GSVIVT01036711001   6 LPPGFRFHPTDEELVAYYLDRKINGGTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDR 96 
                        79****************************.99**************96435566888********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v+s +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  GSVIVT01036711001  97 AVHS-QKRPVGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133
                        ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-663156IPR003441NAC domain
PROSITE profilePS5100560.4676156IPR003441NAC domain
PfamPF023653.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKING GTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVHS QKRPVGMKKT LVYYRGRAPH  120
GLRTNWVMHE YRLIDSMCGS TSSLKDSYAL CRIFKKTIHV SKNKEEENAN VGKESAWGLE  180
EHLSVDDTSG IESSQGREAG DENFEQDCPK FPSDTSSSDI TQGTPFETGV TDDLQAQFPS  240
DEANSSANLY SLNVQYYSSD LIQVQSSSWY NDEKYFLKVC S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-60115612165NO APICAL MERISTEM PROTEIN
1ut4_B9e-60115612165NO APICAL MERISTEM PROTEIN
1ut7_A9e-60115612165NO APICAL MERISTEM PROTEIN
1ut7_B9e-60115612165NO APICAL MERISTEM PROTEIN
4dul_A9e-60115612165NAC domain-containing protein 19
4dul_B9e-60115612165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4656840.0AM465684.2 Vitis vinifera contig VV78X155772.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010645088.10.0PREDICTED: NAC domain-containing protein 45
SwissprotQ9FFI57e-88NAC86_ARATH; NAC domain-containing protein 86
TrEMBLD7T1120.0D7T112_VITVI; Uncharacterized protein
STRINGVIT_19s0085g00950.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-96NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]