PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036686001
Common NameLOC100260359, VIT_19s0085g01180
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 536aa    MW: 57728.1 Da    PI: 7.4833
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036686001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.8e-11164188226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C +++ t tCk+Gd+CkF H+
  GSVIVT01036686001 164 GEKDCAHYMLTRTCKFGDSCKFDHP 188
                        7889********************8 PP
2zf-CCCH30.37.3e-10215241127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C++f++t  Ck+G +CkF+H++
  GSVIVT01036686001 215 PGEPDCPYFMKTQKCKFGHKCKFNHPK 241
                        5789*********************96 PP
3zf-CCCH33.19.5e-11266288527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f+ +tG Ck+G++CkF+H++
  GSVIVT01036686001 266 PCAFYVKTGKCKFGATCKFHHPK 288
                        8********************96 PP
4zf-CCCH38.22.4e-12341364326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        ++ C+f+++tG CkyG++C+++H+
  GSVIVT01036686001 341 EVDCPFYLKTGSCKYGATCRYNHP 364
                        689********************9 PP
5zf-CCCH40.35.4e-13426447526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+f+++tG+Ck+G+rCkF+H+
  GSVIVT01036686001 426 ECDFYMKTGECKFGERCKFHHP 447
                        7********************8 PP
6zf-CCCH41.13e-13474499227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +t +C+f+++tGtCkyG +CkF H+p
  GSVIVT01036686001 474 GTIICPFYLKTGTCKYGVTCKFDHPP 499
                        6889********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011162189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507162190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5163189IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8164188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4168187IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4214241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249214242IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7216241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5219243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4220241IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371261289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6264288IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8266288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-5266287IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802338366IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10341364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5341365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4344363IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6421448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441421449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6422450IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10426447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5427447IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-8472499IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.239472500IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10474499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6474499IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-6475497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MANQLYGYNP SYGAAASNLS SVYPSRSVTD PFLSDSSLLS SSRYLSSDHL SSDPSYYSVT  60
ERHSSMFDGL RFSASDIGGA GAFSSRIPGG IGASVSTHGV DVGASVDPLV AGLKRSSEAL  120
YHPSVLGAHN TIGQSEAWFS TNSLAKRPRF ESASNLPIYP QRPGEKDCAH YMLTRTCKFG  180
DSCKFDHPIW VPEGGIPDWK EVPIVAANEF LPQRPGEPDC PYFMKTQKCK FGHKCKFNHP  240
KDQIISLGAP ENTDVFVLPE RPSELPCAFY VKTGKCKFGA TCKFHHPKDI QIASTGKNNA  300
DGEQAETGAK GAGTTGDVKL PVSVTPALVH NSKGLPMRLG EVDCPFYLKT GSCKYGATCR  360
YNHPDRNAIN PPAAAIGHAI VASPAANLNV GVVNPVTSIL HPIDPRLSQT MGVGPTIYPQ  420
RPGQMECDFY MKTGECKFGE RCKFHHPIDR SAPTATKLQQ NIRLTLAGFP RREGTIICPF  480
YLKTGTCKYG VTCKFDHPPP GEVMAMATSQ GASTSAGEEA NGDEKEDETA KEEEQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.52440.0bud| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4540000.0AM454000.1 Vitis vinifera contig VV78X082437.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269152.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7T0Z40.0D7T0Z4_VITVI; Uncharacterized protein
STRINGVIT_19s0085g01180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)