PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036682001
Common NameVIT_19s0085g01210
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 273aa    MW: 31198.3 Da    PI: 8.0124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036682001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.9e-54101391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+++yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ + +++ewyfFs++dkky+tg+r+nrat +g+Wkatg+d
  GSVIVT01036682001  10 VPPGFRFHPTDEELLHYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgSQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRD 100
                        69****************************.9***************843444443667********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++ ++++ +gl+ktLvfy+grap+g+ktdW+mheyrl
  GSVIVT01036682001 101 KAIHLSNSKRIGLRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                        *************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-593159IPR003441NAC domain
PROSITE profilePS5100558.21610159IPR003441NAC domain
PfamPF023656.7E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007520developmental stageroot development stage
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMPASGQLSV PPGFRFHPTD EELLHYYLRK KVSYEAIDLD VIREVDLNKL EPWDLKDKCR  60
IGSGSQNEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAIHLSNSKR IGLRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD DDNADVQEDG WVVCRVFKKK NHNRGFQSEA AQEEYLTHMR  180
ASGSALLEPK QNVQALYDFN FDGSMHLPQL LSPESAVPPS FISPLSLNTM DIECSQNLLR  240
LTSTVVDHVG TSAQKFPFQY LGCETDILKF SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-53716114167NO APICAL MERISTEM PROTEIN
1ut4_B7e-53716114167NO APICAL MERISTEM PROTEIN
1ut7_A7e-53716114167NO APICAL MERISTEM PROTEIN
1ut7_B7e-53716114167NO APICAL MERISTEM PROTEIN
3swm_A7e-53716117170NAC domain-containing protein 19
3swm_B7e-53716117170NAC domain-containing protein 19
3swm_C7e-53716117170NAC domain-containing protein 19
3swm_D7e-53716117170NAC domain-containing protein 19
3swp_A7e-53716117170NAC domain-containing protein 19
3swp_B7e-53716117170NAC domain-containing protein 19
3swp_C7e-53716117170NAC domain-containing protein 19
3swp_D7e-53716117170NAC domain-containing protein 19
4dul_A7e-53716114167NAC domain-containing protein 19
4dul_B7e-53716114167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at early heart stage onward in all root basal daughter cells resulting from horizontal divisions in the COL progenitors and is later maintained in these cells. Present in root stem cell daughters and accumulates in maturing root cap layers. Detectable from very early stages of lateral root development. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Accumulates in maturing root cap cells, in both COL and LRC cells. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4298491e-164AM429849.2 Vitis vinifera contig VV78X198301.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019072686.10.0PREDICTED: protein SOMBRERO
SwissprotQ9MA171e-114SMB_ARATH; Protein SOMBRERO
TrEMBLF6H9R70.0F6H9R7_VITVI; Uncharacterized protein
STRINGVIT_19s0085g01210.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-117NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]