PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036633001
Common NameLOC100260951, VIT_13s0084g00530
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 264aa    MW: 29642.4 Da    PI: 5.0684
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036633001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT  Ed +l d+++ +G g W++I++  g++R++k+c++rw++yl
  GSVIVT01036633001 14 RGAWTVVEDNILTDYIQTHGEGGWRSIPKNAGLKRCGKSCRLRWLNYL 61
                       89********************************************97 PP
2Myb_DNA-binding482.9e-1567111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+ +  E++l+++++++lG++ W+ Ia++++ gRt++++k++w++ 
  GSVIVT01036633001  67 RGNISHAEEDLIIRLHRLLGNR-WSMIAKRLP-GRTDNEIKNYWNTN 111
                        7888999***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.709961IPR017930Myb domain
SuperFamilySSF466892.19E-2812108IPR009057Homeodomain-like
SMARTSM007176.1E-131363IPR001005SANT/Myb domain
PfamPF002498.1E-151461IPR001005SANT/Myb domain
CDDcd001671.31E-91661No hitNo description
PROSITE profilePS5129425.52162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2465116IPR009057Homeodomain-like
SMARTSM007173.5E-1566114IPR001005SANT/Myb domain
PfamPF002491.5E-1367112IPR001005SANT/Myb domain
CDDcd001673.15E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRAPCCAKE GLNRGAWTVV EDNILTDYIQ THGEGGWRSI PKNAGLKRCG KSCRLRWLNY  60
LKPDIKRGNI SHAEEDLIIR LHRLLGNRWS MIAKRLPGRT DNEIKNYWNT NLRKKVKGKE  120
SNKVDEPAGV IRTKAFRCTG VFIPPQPPKE ETATLDTMVV PEEPSMMNQD LVNNAATSLE  180
SQSNDGALSM AVPDMNSSDF SMNFDIGDHS PTDIFDSEFW KACNLDNVLE EGSTSGDTND  240
PWPSSDQFLM FSDEMIKDWI KDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4772750.0AM477275.2 Vitis vinifera contig VV78X042136.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263795.10.0PREDICTED: transcription repressor MYB6
TrEMBLD7TX690.0D7TX69_VITVI; Uncharacterized protein
STRINGVIT_13s0084g00530.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-60myb domain protein 7