PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036552001 | ||||||||
Common Name | LOC100248088, VIT_14s0083g01060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28371.8 Da PI: 6.717 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63 | 6e-20 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v +G g+W+++ar+ g++R++k+c++rw +yl GSVIVT01036552001 17 KGPWTPEEDKLLSEYVSSHGEGRWSSVARCSGLNRSGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.4e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg Tt E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ GSVIVT01036552001 70 RGHITTMEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 114 6778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.497 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-31 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-17 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.89E-13 | 19 | 64 | No hit | No description |
SMART | SM00717 | 1.9E-13 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.448 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.2E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-9 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVGLMGWGSV PVQGWRKGPW TPEEDKLLSE YVSSHGEGRW SSVARCSGLN RSGKSCRLRW 60 VNYLRPGLKR GHITTMEEGI IIELHALWGN KWSTIARYLP GRTDNEIKNY WRTHFKKNQK 120 QQKPKAQQPL EPKLQQQQQQ QQEDHEIKLE NGKMGEAQGK QEAISMEDQC LPVMYQEIDD 180 HQARQQVASM YPTILEDLCL PVTYQDHLQG EDQGLWGGLW NLDDTIDHTI SGGGNSSQNY 240 YNGGYIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 17 | 117 | 7 | 106 | B-MYB |
1h8a_C | 1e-23 | 17 | 117 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM456103 | 0.0 | AM456103.1 Vitis vinifera contig VV78X003633.7, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278098.2 | 0.0 | PREDICTED: transcription factor MYB59 | ||||
TrEMBL | D7SMN9 | 0.0 | D7SMN9_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0083g01060.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 5e-68 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036552001 |
Entrez Gene | 100248088 |