PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036388001 | ||||||||
Common Name | LOC100258486, VIT_18s0001g05850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 20093.8 Da PI: 5.7141 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 12 | 63 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr +k +g+Wv+eIr+p gk++r++lg++ +e+Aa+a++ a++ l+g+ GSVIVT01036388001 12 PSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEAPEMAAAAYDVAALHLKGH 63 57*****999.**********8...557***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.9E-12 | 12 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-19 | 12 | 72 | No hit | No description |
SMART | SM00380 | 1.0E-34 | 13 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-31 | 13 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-21 | 13 | 71 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-12 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-12 | 52 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKNRADPHAP IPSYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYEAPEMAA AAYDVAALHL 60 KGHRAELNFP ELAPSFPRPT SFSPEDVQFA SAQAALHIKS IASGDVSARS PSRVGMSSVP 120 TRVGLSASEI REINEWPMDS PRMWMMELRE EPLVLSDEIF ELSEWEEVEN QYSIWDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-16 | 14 | 70 | 6 | 63 | ATERF1 |
3gcc_A | 3e-16 | 14 | 70 | 6 | 63 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.25966 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM469581 | 0.0 | AM469581.1 Vitis vinifera contig VV78X027004.57, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275853.1 | 1e-126 | PREDICTED: ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A438HPD4 | 1e-125 | A0A438HPD4_VITVI; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | D7TLF2 | 1e-125 | D7TLF2_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g05850.t01 | 1e-126 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 4e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036388001 |
Entrez Gene | 100258486 |