PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036228001
Common NameLOC104881465, VIT_14s0081g00520
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 172aa    MW: 18813.4 Da    PI: 10.1908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036228001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-203281255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a++ a+++l+g
  GSVIVT01036228001 32 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDDAARSLRG 81
                       69*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.08E-193188No hitNo description
Gene3DG3DSA:3.30.730.108.8E-313289IPR001471AP2/ERF domain
PROSITE profilePS5103222.4313289IPR001471AP2/ERF domain
PfamPF008475.5E-133281IPR001471AP2/ERF domain
SMARTSM003806.8E-353296IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-223289IPR016177DNA-binding domain
PRINTSPR003672.0E-103344IPR001471AP2/ERF domain
PRINTSPR003672.0E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAVETLHLAK EGFTAADEDD QLPSPSPAKE AHFRGVRKRP WGRFAAEIRD PWKKTRKWLG  60
TFDTAEEAAR AYDDAARSLR GPKAKTNFSP VRSLPVVSGF GDRVNRWRAA YVAPDGRTVC  120
FPGTAGGPAE IAAGFSGYKY DAVAVLVRSE VEEKKKKKPL PFDLNLPPSL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-192088271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4753750.0AM475375.2 Vitis vinifera contig VV78X065904.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660119.11e-121PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLD7TXI41e-120D7TXI4_VITVI; Uncharacterized protein
STRINGVIT_14s0081g00520.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-23ERF domain protein 12