PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036202001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 100aa MW: 11524.2 Da PI: 8.2012 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00046 | 64 | 82 | 3 | 21 |
HHHHHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafe 21 +++ rE+ RR+++N+++ GSVIVT01036202001 64 ESKACREKMRREKMNDRLK 82 67889***********985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MDSFEDGGWD LLDYCIIEDA TSADYFWANQ SPSREINALV VDTVSTEKRC KRGREKGERC 60 SRAESKACRE KMRREKMNDR LKSRPNCLML FLRIVGILL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.8301 | 3e-80 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM448871 | 2e-38 | AM448871.2 Vitis vinifera contig VV78X150295.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268590.2 | 4e-53 | PREDICTED: transcription factor bHLH104 | ||||
TrEMBL | F6HVH6 | 9e-52 | F6HVH6_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0081g00720.t01 | 1e-52 | (Vitis vinifera) |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036202001 |