PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036201001
Common NameLOC104877303, VIT_14s0081g00730
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 185aa    MW: 20925.3 Da    PI: 4.5271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036201001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-1979128355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+ +++g
  GSVIVT01036201001  79 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAAFAMRG 128
                        9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-1478128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-3178137IPR001471AP2/ERF domain
PROSITE profilePS5103223.10378136IPR001471AP2/ERF domain
SMARTSM003801.8E-3878142IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2379138IPR016177DNA-binding domain
PRINTSPR003675.7E-117990IPR001471AP2/ERF domain
CDDcd000182.70E-2279138No hitNo description
PRINTSPR003675.7E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MADSSFFHNS NSQFSPESSL GSPDFFSFHD PLPFDQNDSE EMLLYGVLSE AVADDSYMKE  60
EVCSKVKAIE EEPMKEVSYR GVRKRPWGKY AAEIRDSTRN GVRVWLGTFD TAEAAALAYD  120
QAAFAMRGSL AVLNFPADMR HSIKNKSRKR KEKELRLENV VEFEDLGTDY LEELLSISES  180
TNPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-28791361572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RKRKEK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415380.0AM441538.1 Vitis vinifera contig VV78X221412.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660112.11e-120PREDICTED: ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y99e-51ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLF6HVH51e-119F6HVH5_VITVI; Uncharacterized protein
STRINGVIT_14s0081g00730.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-37ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]