PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036037001 | ||||||||
Common Name | LOC100246796, VIT_04s0008g07340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | CO-like | ||||||||
Protein Properties | Length: 308aa MW: 33424.4 Da PI: 7.8549 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.4 | 3e-08 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ + +lfC+ ++ +lC C ++ H GSVIVT01036037001 4 KLCDSCKSAPPTLFCRADSAFLCVACDSKVHAA 36 68***************************9954 PP | |||||||
2 | zf-B_box | 27.7 | 5.5e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ GSVIVT01036037001 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91 689*****************************66899999*99986 PP | |||||||
3 | CCT | 70.3 | 4.9e-24 | 240 | 284 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e GSVIVT01036037001 240 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSE 284 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.509 | 1 | 48 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-14 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-6 | 4 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.38E-10 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.893 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-7 | 46 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.69E-9 | 47 | 91 | No hit | No description |
SMART | SM00336 | 1.3E-10 | 49 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.787 | 240 | 282 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.3E-18 | 240 | 282 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MASKLCDSCK SAPPTLFCRA DSAFLCVACD SKVHAANKLA SRHARVWMCE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSAN PLARRHERVP VVPFYDSAAA AAKSNAVNLL LAESSDLNSS 120 HYMFSDIDPY LDLDYPSMDP KLQSQQQQQS SGTDGVVPVQ NKSVQAPLVN DNCFDMDFSG 180 SKSFYNGQSL SQSVSSSSLE VGVVPDGNAM VDVTNPFGRS MNTGSESANQ TAQISSGIDR 240 EARVLRYREK RKNRKFEKTI RYASRKAYAE TRPRIKGRFA KRSEIEVDYS SSGALTADSG 300 YGVVPSF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.4432 | 0.0 | bud| cell culture| flower| fruit| inflorescence| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ392869 | 0.0 | FQ392869.1 Vitis vinifera clone SS0AFA3YO03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263458.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-128 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A438FDZ7 | 0.0 | A0A438FDZ7_VITVI; Zinc finger protein CONSTANS-like 4 | ||||
STRING | VIT_04s0008g07340.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 4e-93 | CONSTANS-like 3 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036037001 |
Entrez Gene | 100246796 |