PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035921001 | ||||||||
Common Name | LOC100254363, VIT_04s0008g06130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TALE | ||||||||
Protein Properties | Length: 220aa MW: 25042.1 Da PI: 5.6773 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.2 | 2.7e-08 | 156 | 189 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + GSVIVT01035921001 156 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 189 469*****************************87 PP | |||||||
2 | ELK | 30 | 1.2e-10 | 110 | 131 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ GSVIVT01035921001 110 ELKHELKQGYKEKIVDIREEIL 131 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 1.9E-25 | 2 | 53 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-20 | 2 | 52 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 110 | 130 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.3E-7 | 110 | 131 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 110 | 131 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 130 | 193 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-16 | 132 | 196 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.7E-11 | 132 | 197 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.67E-12 | 133 | 194 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 137 | 194 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.7E-18 | 150 | 189 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MLGDEKELDQ FMTHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGVSPGEGT 60 GATMSDDEED QIDSDANLFD GSLEGADSMG FGPLVPTESE RSLMERVRQE LKHELKQGYK 120 EKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKAKLVQ ETGLQLKQIN 180 NWFINQRKRN WHSNPSTSTV LKSKRKSNAG ENSSGDRFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 3e-13 | 133 | 197 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1137 | 0.0 | bud| cell culture| flower| fruit| inflorescence| leaf| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ388876 | 0.0 | FJ388876.1 Juglans nigra KNAT3-like transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010648713.1 | 1e-162 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 1e-145 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | F6H3V2 | 1e-161 | F6H3V2_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g06130.t01 | 1e-162 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-147 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035921001 |
Entrez Gene | 100254363 |
Publications ? help Back to Top | |||
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