PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035903001
Common NameLOC100250889, VIT_04s0008g05900
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 668aa    MW: 73562.7 Da    PI: 6.4663
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035903001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28204257155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G+++A+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  GSVIVT01035903001 204 KPRVVWSVELHRKFVAAVNQL-GIDRAVPKKILDLMNVEKLTRENVASHLQKYRL 257
                        79*******************.********************************8 PP
2Response_reg791.6e-26201281109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ ++ll ++l++ +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +
  GSVIVT01035903001  20 VLAVDDDPTCLRLLDTLLRRCQY-HVTTTSQAITALKMLRENKnqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANDDPKLVMKGI 109
                        799********************.***************888888*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +e+l +
  GSVIVT01035903001 110 THGACDYLLKPVRIEQLKN 128
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1701666IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.7E-4217152No hitNo description
SuperFamilySSF521721.11E-3517142IPR011006CheY-like superfamily
SMARTSM004481.8E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.7819134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.05E-2221134No hitNo description
PROSITE profilePS5129412.118201260IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-30201262IPR009057Homeodomain-like
SuperFamilySSF466891.18E-19202261IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-25204257IPR006447Myb domain, plants
PfamPF002491.2E-6206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MTVEPRVEDP NDQFPIGMRV LAVDDDPTCL RLLDTLLRRC QYHVTTTSQA ITALKMLREN  60
KNQFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSAND DPKLVMKGIT HGACDYLLKP  120
VRIEQLKNIW QHVIRRRRFD PRDQNNSDSR DKRQGPGEGG QGSSEPGNPD HGKLNKKRKD  180
QNEDDDEEND ENGHDNEDPS SQKKPRVVWS VELHRKFVAA VNQLGIDRAV PKKILDLMNV  240
EKLTRENVAS HLQKYRLYLK RISCVANQQA NMVAALGSTD STYLHSLNGL GNFYNLSGSG  300
QLPNSTFRSF PPSGMLGRLN TPSGMGMHCL SSSEMVQLGH LQNSSNPINK LEQLQHNKGI  360
IRVGELSTTI GDSTVFPASS GFPDTKMTSS RSSSSLLVAA NSPLMLQGHS QENQRRGGLR  420
NQNSATLLNA ELPSSFPDHG RCNDNWSTAV QPSAIQSSSF PLSDCFKQAT LHPSNLRDNI  480
SSVTLQSGTN LRDVSCVTSM PPPLPDSRTD LECQAMTISS NSVKIMNYSP KVWDDHKHKL  540
SHHSSLGCSS ANSLIPAPGV MGTFDQGLDL KNTISDRNMD FNLMGESNFV NPLPMQQNAV  600
EESASDTALQ LKQGCTLGQR KPQSSYASNN VGSLEDLVSA MMKQEQDKTT LMEGDLGYDA  660
YSLGTCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-26200263164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.45830.0bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4585940.0AM458594.2 Vitis vinifera contig VV78X201737.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282928.10.0PREDICTED: two-component response regulator ARR12-like isoform X1
SwissprotA2X1N21e-154ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLF6H3J30.0F6H3J3_VITVI; Two-component response regulator
STRINGVIT_04s0008g05900.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-128response regulator 12