PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035885001 | ||||||||
Common Name | VIT_04s0008g05760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 287aa MW: 31938.9 Da PI: 7.9803 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.2e-30 | 160 | 218 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaed+++++ tYegeHnh+ GSVIVT01035885001 160 KDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSAEDQSLLIATYEGEHNHQ 218 8***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-30 | 149 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.934 | 154 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 156 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-34 | 159 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 160 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009685 | Biological Process | gibberellin metabolic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEFEFIDTSL GLDLKPNPPA NSLGDFSPKR GDCVDVDVER KPSPVLKEDT GGLVEELRRM 60 STENKKLTEL LSIMCENYNA LHNHLKELMR KNSDHQLFNS RKRKAESEDN INNIHGSSGN 120 NTESISSDED SSKKPRESTK GKVSRVVVKT EKSDNSLLLK DGYQWRKYGQ KVTRDNPSPR 180 AYFKCSFAPT CPVKKKVQRS AEDQSLLIAT YEGEHNHQQP SPVEVSLGFN RAATPASVLS 240 PASMPIVQQF LVEQMASSLT RDPSFTAALA AAISGRILDQ TQIEKW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 144 | 220 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.6808 | 0.0 | bud| cell culture| flower| fruit| inflorescence| leaf| pedicel| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU270833 | 0.0 | GU270833.1 Vitis vinifera cultivar Shiraz WRKY transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267948.1 | 0.0 | uncharacterized protein LOC100264507 | ||||
Swissprot | Q9SAH7 | 2e-81 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | F6H3I6 | 0.0 | F6H3I6_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g05760.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-79 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035885001 |