PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035852001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19558.4 Da PI: 10.6108 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.5e-18 | 6 | 56 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f +ae Aa+a+++a+ ++g GSVIVT01035852001 6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFESAEAAARAYDQAAILMNG 56 59*****999.**********8.....334**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.08E-22 | 6 | 66 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-20 | 7 | 65 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.825 | 7 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-11 | 7 | 56 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-37 | 7 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 7 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MVSATKKFRG VRQRQWGSWV SEIRHPLLKR RVWLGTFESA EAAARAYDQA AILMNGQNAK 60 TNFPVALSEI LTTKLRKCCK DPSPSLTCLR LDTDNSHLGV WQKRAGTRSG SSWVMRVELG 120 KKDGQVSDEN SSSFLRSPRG GAEAGDGCSF MTEINLNPRH MVSLIMWLVL KNYGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-16 | 6 | 65 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-16 | 6 | 65 | 4 | 64 | ATERF1 |
3gcc_A | 6e-16 | 6 | 65 | 4 | 64 | ATERF1 |
5wx9_A | 8e-16 | 7 | 64 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.10812 | 1e-137 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM474869 | 1e-132 | AM474869.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X123303.7, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002285107.1 | 3e-90 | PREDICTED: ethylene-responsive transcription factor SHINE 2 | ||||
Swissprot | Q3E958 | 4e-61 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | F6H324 | 6e-89 | F6H324_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g05440.t01 | 1e-89 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11190.1 | 5e-56 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035852001 |
Publications ? help Back to Top | |||
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