PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035827001
Common NameVIT_04s0008g05190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HB-other
Protein Properties Length: 343aa    MW: 38556.3 Da    PI: 4.8624
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035827001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.36.9e-10273320653
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                        +++k q+e+Le+++++++ p+ +++  + + ++L+ ++V  WF  +R+
  GSVIVT01035827001 273 RLKKVQVETLERVYRRTKRPTNAMISSIVHVTNLPRKRVVKWFEDKRT 320
                        57899****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.766265325IPR001356Homeobox domain
SuperFamilySSF466891.92E-9268328IPR009057Homeodomain-like
CDDcd000863.10E-7268319No hitNo description
SMARTSM003891.3E-5271329IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-9273321IPR009057Homeodomain-like
PfamPF000462.0E-7273320IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALASWNLTS LAFKGLLSAS HDQRLFSAAQ PTSNLILPHH CLSRSVLAFS RRRKSNSPVQ  60
SSKKNKKSSA HNNAEEDADL DEDAFEALFN QLEEDLKNDS PSIDDNDEEI SEEDLARLER  120
ELEEALGDDD ELLGMFNSIT DEIESNNDAE EVEDDEDEER PVKLKNWQLR RLASALKTGR  180
RKTSIKSLAA ELCLDRAVVL ELLREPPPNL LLMSAALPDK PVPTITVPET EPVEAVPLDT  240
TRGAVEAAEP AEPEVKGKVP VHVMQSRWSA QKRLKKVQVE TLERVYRRTK RPTNAMISSI  300
VHVTNLPRKR VVKWFEDKRT EDGVPEHRLP FQRSTSETVF SP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954SRRRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.16680.0fruit| inflorescence| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3869470.0FQ386947.1 Vitis vinifera clone SS0AEB28YD18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648647.10.0PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V56e-79OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLF6H3090.0F6H309_VITVI; Uncharacterized protein
STRINGVIT_04s0008g05190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.18e-56overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]