PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01035818001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

CPP

Protein Properties

Length: 1095aa MW: 119355 Da PI: 6.8025

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01035818001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.7	3e-15	573	611	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YC+Cfaag +C+e C C +C+N+ e GSVIVT01035818001 573 CKRCNCKKSKCLKLYCDCFAAGIYCAEGCACVGCFNRAE 611 79**********************************976 PP
2	TCR	49.4	9e-16	658	696	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs C+Ce+CkN GSVIVT01035818001 658 RHKRGCNCKKSMCLKKYCECYQANVGCSAGCRCEGCKNV 696 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.4E-16	571	612	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.411	572	698	IPR005172	CRC domain
Pfam	PF03638	3.9E-11	574	609	IPR005172	CRC domain
SMART	SM01114	2.2E-17	658	699	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.8E-11	660	695	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1095 aa Download sequence Send to blast
MFNKLSGWFD TTMDSPETAK TTTSTTKSSS QSPPLQVTTF PPIPPPETAA TTATSSSKSP 60 PVQDSPFSTY VSNLSPIKPV KAAHVAQEFP GLCSPPLVFT SPRINPHHET SFLKRTQCHH 120 VQFSTDNGRG KKVAAVSNIS DNANAQLNTG LVAKVEKECD IKDSVQDQPC SSSGCVDEYL 180 ADTMEADSAI SAHSAGSCLN QSNDALQSLQ SGFTDSNNTT ARFFDKKNIS VDKKRELDAS 240 PALLEQAEDE LQGKSAFNVK PVPTDGKQRG GERTSTEVLN VESNLSVDYA SEQLYESSVA 300 QFLFVKLCYN ISQDVKLQTA GGNQDELDCT PHLMPEALQI VRMDENCAQQ AGEISNGPVE 360 NTVLHDPEAS QQTQHQRGML RRCLQFGEAQ LNIITNNPSF SYPTSIAANS RLLATPSDSE 420 LPESSCVDLT TTSSNKQLAY SQPVTAMLPP QNSGNSSLAG SKPSGIGLHL NSIVNAVPMG 480 FSSTTSLKVE EKDYSSAWRI SDSIPSNVIE NSAGTEDRRN ENKASIAMSS ATSQSSHGIQ 540 PTKPKKEKAS LSFHVISHNF DFSASSTNDG DGCKRCNCKK SKCLKLYCDC FAAGIYCAEG 600 CACVGCFNRA EYDDRVLETR KQIESRNPLA FAPKIVPPVN GSPINSGEDG RSTPSSARHK 660 RGCNCKKSMC LKKYCECYQA NVGCSAGCRC EGCKNVYGRK EEYGAFKEMM SRRANDDRLE 720 SSFDKKLEMV AARSDFLRPE LCNPHNMTPM TPSFQCSDHG NDAANFQIPS RRYAQSPESD 780 FSILSSYGKS PVSPKNSDSH NILPEPGKEI WDMACYEHEF EYGNAEKVDQ FTPGSMNPSA 840 SSKTSGLTNV SRGQLCPGSD HLVSGGSLRW RSSPIPPSTQ LGETKIFQGL ESDNELYDIL 900 EDDTPTILKD ASTPTKAVKA SSPKQKRVSP PKIQSHERGS SSSLAILKSG RKFILQAVPS 960 FPPLTPCIDT KSSSHQNSSD PQDSIMDMGA KIAICRTLSC GLEDCVRIPS DNHLQGLMGK 1020 DGKRNLVRQL LLLIHVLFFL LFFFRIFEHF FLVQLHVSSN GNISQMVSFC WRYGSCYSFS 1080 RCIGFSHFLT NIEK*

Sequence ? help Back to Top

Protein Sequence Length: 1095 aa Download sequence Send to blast

MFNKLSGWFD TTMDSPETAK TTTSTTKSSS QSPPLQVTTF PPIPPPETAA TTATSSSKSP  60
PVQDSPFSTY VSNLSPIKPV KAAHVAQEFP GLCSPPLVFT SPRINPHHET SFLKRTQCHH  120
VQFSTDNGRG KKVAAVSNIS DNANAQLNTG LVAKVEKECD IKDSVQDQPC SSSGCVDEYL  180
ADTMEADSAI SAHSAGSCLN QSNDALQSLQ SGFTDSNNTT ARFFDKKNIS VDKKRELDAS  240
PALLEQAEDE LQGKSAFNVK PVPTDGKQRG GERTSTEVLN VESNLSVDYA SEQLYESSVA  300
QFLFVKLCYN ISQDVKLQTA GGNQDELDCT PHLMPEALQI VRMDENCAQQ AGEISNGPVE  360
NTVLHDPEAS QQTQHQRGML RRCLQFGEAQ LNIITNNPSF SYPTSIAANS RLLATPSDSE  420
LPESSCVDLT TTSSNKQLAY SQPVTAMLPP QNSGNSSLAG SKPSGIGLHL NSIVNAVPMG  480
FSSTTSLKVE EKDYSSAWRI SDSIPSNVIE NSAGTEDRRN ENKASIAMSS ATSQSSHGIQ  540
PTKPKKEKAS LSFHVISHNF DFSASSTNDG DGCKRCNCKK SKCLKLYCDC FAAGIYCAEG  600
CACVGCFNRA EYDDRVLETR KQIESRNPLA FAPKIVPPVN GSPINSGEDG RSTPSSARHK  660
RGCNCKKSMC LKKYCECYQA NVGCSAGCRC EGCKNVYGRK EEYGAFKEMM SRRANDDRLE  720
SSFDKKLEMV AARSDFLRPE LCNPHNMTPM TPSFQCSDHG NDAANFQIPS RRYAQSPESD  780
FSILSSYGKS PVSPKNSDSH NILPEPGKEI WDMACYEHEF EYGNAEKVDQ FTPGSMNPSA  840
SSKTSGLTNV SRGQLCPGSD HLVSGGSLRW RSSPIPPSTQ LGETKIFQGL ESDNELYDIL  900
EDDTPTILKD ASTPTKAVKA SSPKQKRVSP PKIQSHERGS SSSLAILKSG RKFILQAVPS  960
FPPLTPCIDT KSSSHQNSSD PQDSIMDMGA KIAICRTLSC GLEDCVRIPS DNHLQGLMGK  1020
DGKRNLVRQL LLLIHVLFFL LFFFRIFEHF FLVQLHVSSN GNISQMVSFC WRYGSCYSFS  1080
RCIGFSHFLT NIEK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-19	574	696	12	121	Protein lin-54 homolog
5fd3_B	3e-19	574	696	12	121	Protein lin-54 homolog

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.29212	0.0	bud

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM436368	0.0	AM436368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X217263.35, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282493.2	0.0	PREDICTED: CRC domain-containing protein TSO1
TrEMBL	A0A438F246	0.0	A0A438F246_VITVI; CRC domain-containing protein TSO1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	9e-61	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	GSVIVT01035818001