PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035663001
Common NameVIT_04s0008g03780
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 853aa    MW: 94128.5 Da    PI: 5.2547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035663001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.4e-193783148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  GSVIVT01035663001 37 KGQWTAEEDEILCKAVQRYKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                       799****************************9.************986 PP
2Myb_DNA-binding63.25.2e-2089135148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W++eEde ++++v+++G + W+tIa++++ gR +kqc++rw+++l
  GSVIVT01035663001  89 KGPWSKEEDEVIIELVNKYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                        79******************************.*************97 PP
3Myb_DNA-binding49.11.3e-15141183145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        + +WT+eE++ lv+a++ +G++ W+   + ++ gRt++ +k++w+
  GSVIVT01035663001 141 KEAWTQEEELALVRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183
                        579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.943283IPR017930Myb domain
SuperFamilySSF466891.86E-163390IPR009057Homeodomain-like
SMARTSM007172.1E-153685IPR001005SANT/Myb domain
PfamPF002496.3E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-223991IPR009057Homeodomain-like
CDDcd001673.67E-144083No hitNo description
PROSITE profilePS5129432.77184139IPR017930Myb domain
SuperFamilySSF466891.15E-3186182IPR009057Homeodomain-like
SMARTSM007171.1E-1888137IPR001005SANT/Myb domain
PfamPF002492.8E-1889135IPR001005SANT/Myb domain
CDDcd001671.04E-1691135No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2792139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-21140190IPR009057Homeodomain-like
PROSITE profilePS5129419.348140190IPR017930Myb domain
SMARTSM007171.0E-14140188IPR001005SANT/Myb domain
PfamPF002492.2E-13141184IPR001005SANT/Myb domain
CDDcd001671.54E-11143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MESDRTITPP TEGVSDGFQK MRPPHGRTSG PTRRSTKGQW TAEEDEILCK AVQRYKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEVI IELVNKYGAK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALVRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYIASGLLA QFQGLPLRQF NSNEQPAISS FELGQASSGL SSHFNGGNEN  240
RDTVSIPLQT SVGLNASSSM GNMGVDSDIP EHLLISEGDC CGFRFQEAGT DEYFSSENLT  300
RCTNAIELEC TDPLVCQSSD FQISETSGTS ASQPYYPLRS EMLEASCCQS LLSVPSVHPA  360
VDCTFIFGTE TNQLKNKDLQ EQPGPAKDSV NLVPVDSFGS GPSDIMHTCP SREGKQLAHT  420
EQQDEGALFY EPPRFPSLDI PFFSCDLIQS GSDMQQEYSP LGIRQLMMSS MNCLTPFRLW  480
DSPSRDDSPD AVLKSAAKTF TGTPSILKKR HRDLLSPSPL SERRSDKKLE SDINQGNSGP  540
FDEDKENLGH VFVDFDGRNS LDNIRQGNVD VDAKTKFDAD ADVQIVSQPS GVLVEQNMNH  600
QVLFSPDQVG FKTDKTFGSS RRNRGNQFSR SLEATLKQHA PSESSSGNPC LSVVDLPAVV  660
GKNHDGHLVA ATSMPSNTSS NPQDTMVGNA GNDDDVGTFS LFGETPFKRS IDSPSAWKSP  720
WFINSFVPGP RVDTEISVED IEYFMSPGDR SYDAIGLMKQ LSEHTAETFA DAKEVLRIGA  780
SEVMSKERCS SNNNHDPDHQ LENHSHLASE VLTERVLDFS DCGTPGKETT KGKSSAAPGF  840
SSPSSYLLKG CR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-69371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-69371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in the columella root cap. Also present in floral organs in young flower buds. Strongly expressed in vascular tissues of filaments and anthers. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed both in proliferating and maturing stages of leaves (PubMed:26069325). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}.
UniprotTISSUE SPECIFICITY: Expressed ubiquitously at low levels (PubMed:10743663). Expressed in roots, cotyledons, flowers and leaves, especially in vascular tissues (PubMed:17287251). {ECO:0000269|PubMed:10743663, ECO:0000269|PubMed:17287251}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4804060.0AM480406.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X096618.37, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648515.10.0PREDICTED: myb-related protein 3R-1 isoform X1
SwissprotQ9S7G71e-108MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLF6H2Y20.0F6H2Y2_VITVI; Uncharacterized protein
STRINGVIT_04s0008g03780.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9448613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-111Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]