PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035614001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 197aa    MW: 22734.3 Da    PI: 10.8482
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035614001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.3e-1875109135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  GSVIVT01035614001  75 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 109
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-1669119IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.33469105IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-1572133No hitNo description
Gene3DG3DSA:3.30.50.101.5E-1473107IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.90E-1374121No hitNo description
PROSITE patternPS00344075100IPR000679Zinc finger, GATA-type
PfamPF003205.5E-1675109IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MLISLATYAC RMMIWLSSNG SRTSLRNHSR ARTWKSFTSA HEPCHASGRR AFSRFPLQKE  60
SPEVVAGGCS DGRKCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT  120
FVLTKHSNSH RKVLELRRQK EMVRSQHQHQ QQQFLHHQNM VFDFLLCLIW QVLKPIFHNF  180
SNFFIFSSYH VLHMNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.152881e-169inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4545871e-176AM454587.2 Vitis vinifera contig VV78X034322.8, whole genome shotgun sequence.
GenBankFQ3807641e-176FQ380764.1 Vitis vinifera clone SS0ACG33YH16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283745.14e-63PREDICTED: GATA transcription factor 9
SwissprotP697811e-46GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A438K8939e-62A0A438K893_VITVI; GATA transcription factor
TrEMBLA5BCJ09e-62A5BCJ0_VITVI; GATA transcription factor
STRINGVIT_04s0008g03270.t012e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-48GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]