PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035569001
Common NameVIT_04s0008g02870
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 251aa    MW: 28819.5 Da    PI: 5.0349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035569001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.61e-102597276
           trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76
                       Wt +  l L++    +e +  ++ +  ++W+ +++++ +  ++r+ +qC+ kw++l  +y kik++e++   +++
  GSVIVT01035569001 25 WTINDSLILVNEIAAVEGECLNALSTYQKWKIIAENCTALDVSRTFNQCRRKWDSLLFEYNKIKKWESRS--RNV 97
                       777777777777778888888888999*****************************************84..333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0852581IPR017877Myb-like domain
PfamPF138371.2E-83399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEQGEGHQSR VSSSRRTRSQ LAPDWTINDS LILVNEIAAV EGECLNALST YQKWKIIAEN  60
CTALDVSRTF NQCRRKWDSL LFEYNKIKKW ESRSRNVSFW TLESERRREL GLPVDFEREL  120
FKAIDDLVSS QEVRSDTDPG TDPEAEDDRL EVIAEYGPKK QKRREMPQKT TSLEEKEQMM  180
VMKLRENADL IDAIVKGNLV DSVDFGLGGS KNRETLQADF KRRQGDKLIA CLRDIADTLD  240
QLRDIVQKCG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163PKKQKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.132420.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3922390.0FQ392239.1 Vitis vinifera clone SS0AFA6YL05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283217.10.0PREDICTED: trihelix transcription factor ASR3
RefseqXP_003631820.10.0PREDICTED: trihelix transcription factor ASR3
TrEMBLF6H2V60.0F6H2V6_VITVI; Uncharacterized protein
STRINGVIT_04s0008g02870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP74821314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-58sequence-specific DNA binding transcription factors