PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035554001
Common NameLOC100259270, VIT_04s0008g02710
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 326aa    MW: 36575.4 Da    PI: 8.6525
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035554001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1782.5e-55101371128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+
  GSVIVT01035554001  10 LPPGFRFHPTDEELITCYLINKISDATFTG-RAIADVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEI 100
                        79*************************999.89***************99999*************************************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+
  GSVIVT01035554001 101 FNSvTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 137
                        *9989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-647158IPR003441NAC domain
PROSITE profilePS5100560.10710158IPR003441NAC domain
PfamPF023653.2E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEEERKEETL PPGFRFHPTD EELITCYLIN KISDATFTGR AIADVDLNKC EPWELPGKAK  60
MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSVTSELVG MKKTLVFYRG  120
RAPRGEKTNW VMHEYRIHSK SAFRTSKDEW VVCRVFQKSA AGKKYPSNQS RGMNPYSLDI  180
GPSVMPPPML QADSSQFPMG RNYVSNAELA ELTRVLRGGS TGGLNLPIQS QLNYPLGGGC  240
FTISGLNLNL GGTSTQPVLR PNSLPQPMQM NQQDHMMTSP MLTSGSIPTD QTGYGAEVNN  300
GNGHNSRFMN MVDHCVDLDN YWPPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-56916416171NO APICAL MERISTEM PROTEIN
1ut4_B2e-56916416171NO APICAL MERISTEM PROTEIN
1ut7_A2e-56916416171NO APICAL MERISTEM PROTEIN
1ut7_B2e-56916416171NO APICAL MERISTEM PROTEIN
3swm_A2e-56916419174NAC domain-containing protein 19
3swm_B2e-56916419174NAC domain-containing protein 19
3swm_C2e-56916419174NAC domain-containing protein 19
3swm_D2e-56916419174NAC domain-containing protein 19
3swp_A2e-56916419174NAC domain-containing protein 19
3swp_B2e-56916419174NAC domain-containing protein 19
3swp_C2e-56916419174NAC domain-containing protein 19
3swp_D2e-56916419174NAC domain-containing protein 19
4dul_A2e-56916416171NAC domain-containing protein 19
4dul_B2e-56916416171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4873840.0AM487384.2 Vitis vinifera contig VV78X065901.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280812.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
RefseqXP_010648442.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
RefseqXP_019074708.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
TrEMBLA0A438K8Z30.0A0A438K8Z3_VITVI; Protein cup-shaped cotyledon 2
TrEMBLD7SU400.0D7SU40_VITVI; Uncharacterized protein
STRINGVIT_04s0008g02710.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-116NAC domain containing protein 38