PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035534001
Common NameLOC100256015, VIT_04s0008g02540
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 377aa    MW: 42627.3 Da    PI: 7.4791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035534001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00026892123
                       EEETTTTEEESSHHHHHHHHHH..T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                       y+C+ Cgk ++++  L +H+++  H
  GSVIVT01035534001 68 YSCSLCGKGYRSSKALGQHLKSrsH 92
                       99******************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.075135IPR003604Zinc finger, U1-type
SuperFamilySSF576677.16E-7336No hitNo description
SMARTSM0035531428IPR015880Zinc finger, C2H2-like
PfamPF121714.2E-5529IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280628IPR007087Zinc finger, C2H2
SMARTSM004511.56599IPR003604Zinc finger, U1-type
SuperFamilySSF576671.19E-567100No hitNo description
PROSITE profilePS5015710.2636892IPR007087Zinc finger, C2H2
PfamPF121715.1E-56892IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0466892IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807092IPR007087Zinc finger, C2H2
SuperFamilySSF576671.67E-8133206No hitNo description
PfamPF127562.4E-26150251IPR015880Zinc finger, C2H2-like
SMARTSM0035516199226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042273Biological Processribosomal large subunit biogenesis
GO:0022625Cellular Componentcytosolic large ribosomal subunit
GO:0030687Cellular Componentpreribosome, large subunit precursor
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MATLTCNACN KEFIGESDQK LHYKSDWHRY NLKRKIAGVP GVTEALYLAR QSSLAEEKNR  60
LNETPMLYSC SLCGKGYRSS KALGQHLKSR SHILRASQRA SHQDEETTII KPLTHRTANK  120
PPPQREPVNE ESEDDDDDDD FEIKLDPTCC FMCDQEQNTI ERCIVHMHKQ HGFFIPDVEY  180
LKDPKGLLTY LGLKVTRDFM CLYCNDGCHP FNSLEAVRKH MVAKSHCKVH YGDGGDDEEA  240
ELEEFYDYSS SYVDVDEKQL VASGDMNNTV ELGCGGSELI ITRRTDGGIS TKSLGSREFL  300
RYYRQKPRPS PMNGAAITAA LASRYRSMGL ATVQSREQIV RMKVMKQMNK SGVEAMRSKI  360
GMKSNVIRNL PNNVPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6qik_z1e-2243536409Cytoplasmic 60S subunit biogenesis factor REH1
6qt0_z1e-2243536409Cytoplasmic 60S subunit biogenesis factor REH1
6qtz_z1e-2243536409Cytoplasmic 60S subunit biogenesis factor REH1
6ri5_z1e-2243536409Cytoplasmic 60S subunit biogenesis factor REH1
6s05_z1e-2243536409Cytoplasmic 60S subunit biogenesis factor REH1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.4710.0bud| fruit| stem
Functional Description ? help Back to Top
Source Description
UniProtPre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250|UniProtKB:P38344, ECO:0000269|PubMed:24038679}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold. {ECO:0000269|PubMed:24038679}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4339821e-167AM433982.2 Vitis vinifera contig VV78X163745.21, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282746.10.0PREDICTED: cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
SwissprotQ9ZQ181e-173REIL2_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 2
TrEMBLF6H3B40.0F6H3B4_VITVI; Uncharacterized protein
STRINGVIT_04s0008g02540.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP378422
Publications ? help Back to Top
  1. Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J
    The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold.
    Plant Physiol., 2013. 163(4): p. 1623-39
    [PMID:24038679]
  2. Beine-Golovchuk O, et al.
    Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.
    Plant Physiol., 2018. 176(3): p. 2251-2276
    [PMID:29382692]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]