PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035502001
Common NameLOC100250941, VIT_04s0008g02230
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 192aa    MW: 21333.5 Da    PI: 4.8042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035502001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-202374156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g+
  GSVIVT01035502001 23 TKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRGH 74
                       69*****999.**********933...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-292383No hitNo description
PfamPF008471.4E-122374IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-212483IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-292482IPR001471AP2/ERF domain
PROSITE profilePS5103221.972481IPR001471AP2/ERF domain
SMARTSM003805.6E-322487IPR001471AP2/ERF domain
PRINTSPR003671.1E-92536IPR001471AP2/ERF domain
PRINTSPR003671.1E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVKPTAATAT TTSEGGQPGN SETKYKGVRK RKWGKWVSEI RLPNSRERIW LGSYDTPEKA  60
ARAFDAALFC LRGHGAKFNF PDNPPDIPGR ESLTPSEIQL VAARFANEEP PKECSELESQ  120
HSQSESHHYN YTPSCSLSEQ LENETIMDGS FWSIRDYSYI DGGGLGISPP SPMDESGGEE  180
FFQQSSFLWN F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-161481372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4775310.0AM477531.2 Vitis vinifera contig VV78X143987.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280370.11e-141PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC28e-47ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLD7STZ71e-140D7STZ7_VITVI; Uncharacterized protein
STRINGVIT_04s0008g02230.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]