PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035463001
Common NameLOC100266387, VIT_04s0008g01830
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 271aa    MW: 30036.9 Da    PI: 4.7986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035463001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.7e-151360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT+ Ede l ++vk++G g W  +a+  g++R++k+c++rw++yl
  GSVIVT01035463001 13 KGVWTAHEDEVLGNYVKLHGEGKWVNVAKATGLKRSAKSCRLRWLNYL 60
                       799*******************************************97 PP
2Myb_DNA-binding46.96.3e-1571110647
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +E++l+++++++lG++ W++Ia++++ gRt++++k++w++ 
  GSVIVT01035463001  71 LDEEDLIIRLHRLLGNR-WSLIAKRLP-GRTDNEIKNYWHST 110
                        58***************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-20662IPR009057Homeodomain-like
PROSITE profilePS5129416.11860IPR017930Myb domain
SuperFamilySSF466895.62E-2811107IPR009057Homeodomain-like
SMARTSM007177.4E-131262IPR001005SANT/Myb domain
PfamPF002491.0E-121360IPR001005SANT/Myb domain
CDDcd001674.31E-101660No hitNo description
PROSITE profilePS5129425.29661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2363115IPR009057Homeodomain-like
SMARTSM007172.8E-1465113IPR001005SANT/Myb domain
PfamPF002491.9E-1372109IPR001005SANT/Myb domain
CDDcd001672.30E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRPPCFEDG LNKGVWTAHE DEVLGNYVKL HGEGKWVNVA KATGLKRSAK SCRLRWLNYL  60
KPDIKRGNIA LDEEDLIIRL HRLLGNRWSL IAKRLPGRTD NEIKNYWHST LKKKVQESSS  120
NHCKSKKKPM MEPSAESAES LKMDSCLSPN KDVINCTTSS SAHPFPLLFP VDEHPEAFTP  180
VEPSIDGGLG KEIVAEQPPE SGDEIFPVNI SCGNDALWDS LMDFDVDQLC LSEILEENFA  240
SFSEFDSMTV GECGINGCQD DPLPSFSDLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.296100.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4246750.0AM424675.2 Vitis vinifera contig VV78X269243.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279910.20.0PREDICTED: myb-related protein 305
TrEMBLF6H3S20.0F6H3S2_VITVI; Uncharacterized protein
STRINGVIT_04s0008g01830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.13e-50myb domain protein 32