PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035461001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 35029.9 Da PI: 4.9488 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Edellv+++k +G g W+ I+++ g++R++k+c++rw++yl GSVIVT01035461001 14 KGAWTAIEDELLVEYIKVHGEGKWSGIPKKSGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ GSVIVT01035461001 67 RGNMSPEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.526 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.038 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MGRGPCCSKE GMNKGAWTAI EDELLVEYIK VHGEGKWSGI PKKSGLKRCG KSCRLRWLNY 60 LRPDIKRGNM SPEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT NFAKKAPARQ 120 TSSSEKNPIM ITSPPSDLLP PNLQQQQFTN VWATPLQPEL EFEALPPPMD QNFSKTTASE 180 PQFTDNSPDI IMDLNPGEIS VSEIFNDDFI NFNDFEASEM RNIDNRCNTQ VQEIAENWAA 240 SDCLDQAQYY MGSDFSPLAF LFESEGHLTT PNNKATTYIL ILLLMSPYFN IQPKISILNL 300 IFKISIFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.30237 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM437441 | 0.0 | AM437441.1 Vitis vinifera contig VV78X080653.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279874.1 | 0.0 | PREDICTED: transcription factor MYB3 isoform X1 | ||||
Swissprot | Q9S9K9 | 2e-60 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A438EX36 | 0.0 | A0A438EX36_VITVI; Transcription repressor MYB4 | ||||
TrEMBL | F6H3S0 | 0.0 | F6H3S0_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g01810.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-62 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035461001 |