PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035459001
Common NameLOC100264614, VIT_04s0008g01800
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 266aa    MW: 29900.9 Da    PI: 9.003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035459001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.7e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+ Ed++l  ++k +G g W+  +++ g++R++k+c++rw++yl
  GSVIVT01035459001 14 RGAWTALEDKILTAYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                       89********************************************97 PP
2Myb_DNA-binding51.72.1e-1667111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  GSVIVT01035459001  67 RGNISHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                        78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.991961IPR017930Myb domain
SuperFamilySSF466891.13E-2712108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002493.3E-131461IPR001005SANT/Myb domain
CDDcd001672.91E-91661No hitNo description
PROSITE profilePS5129425.56962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2465115IPR009057Homeodomain-like
SMARTSM007173.9E-1566114IPR001005SANT/Myb domain
PfamPF002492.1E-1467111IPR001005SANT/Myb domain
CDDcd001671.51E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILTAYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKIGAQP  120
TNQSRLKSKP PIDHKPTAIE PEAAPAQPQV IRTKATRCTK VLVPTDPPPR LSEPRPIDST  180
TPQNPLQAQP QQTHSVAPWG PTDFTPDYGT ITNSNLFNED YSYSNLLENV TPFKFEDWAS  240
NDCLENNAAL DLDSLAFLLN SEEWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3830650.0FQ383065.1 Vitis vinifera clone SS0ABG33YC03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648383.10.0PREDICTED: myb-related protein 308
TrEMBLD7STW40.0D7STW4_VITVI; Uncharacterized protein
STRINGVIT_04s0008g01800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-63myb domain protein 7